PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G006500.4.p
Common NameGLYMA_16G006500, LOC100782501
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 648aa    MW: 71677.1 Da    PI: 6.6157
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G006500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.5e-08534582348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          +WT  E  +lv++v + G g+W+ I r        Rt  ++k++w+++l
  Glyma.16G006500.4.p 534 AWTLVEVIKLVEGVSRCGAGRWSEIKRLSFasySYRTSVDLKDKWRNLL 582
                          7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.948527586IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-11529585IPR009057Homeodomain-like
SuperFamilySSF466891.3E-14529586IPR009057Homeodomain-like
SMARTSM007178.8E-8531584IPR001005SANT/Myb domain
CDDcd116605.67E-19533583No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0031627Biological Processtelomeric loop formation
GO:0046686Biological Processresponse to cadmium ion
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
METVVGIEDN DDGRFEDSGV DRSSSALSSP KQISNPIVYK LVRVEGDGKL VPATDDEVME  60
VGDFLEYENS EMHVVTNTGQ SLECISIERS SSGKLRLECL EEADLGKLNA KLQYIEQILQ  120
KVKEEEKHRI SCGSPVHSHE NIDSQCSADK FPVMDGKVQS ETPCQEIPSI ASSFNYTHSN  180
QSGSIDQCSR PSEGVIESGS SASAVYSNLK SDISMSDGEI CLDKLSIREL HELFKVTFGR  240
ETTVKDKQWL KRRIAMSLTN SCDVSATTFI IKDNKIVRKF EEDSSGNMNA GSLISSENMT  300
EEDVNFKDSS AVDACGIDDN QVVSETRSEN GLEYENYQTG QRAAKRIRRP TKRYIEELSE  360
NESREHNPRL SISNKTVGFG HVSPTSNVRP ARNAFSEART YSTRLDSLGG SNVQIPCVSR  420
VRRSRPRKDI ASLMKFHPTG MGEAEKLSNK LLEHSSDAGS DFSDKVLKSR MPAKFHQPSS  480
SEPVKEQCPV ICPIELRQEL RPKRADPSGH TSDDNNIVTV PTAKGGMRRK HHRAWTLVEV  540
IKLVEGVSRC GAGRWSEIKR LSFASYSYRT SVDLKDKWRN LLKASFALAP ADEGINSRKH  600
GTAPIPEKIL LRVRELAEMN SQVPPNYSSS QLASGGGSVH GDRSGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1421427RRSRPRK
2421428RRSRPRKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.242290.0cotyledon| flower| hypocotyl| leaf| root| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G006500.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5607070.0FJ560707.1 Glycine max transcription factor MYB884 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006598821.10.0uncharacterized protein LOC100782501 isoform X2
RefseqXP_028207046.10.0uncharacterized protein LOC114390506 isoform X2
TrEMBLA0A445GCG30.0A0A445GCG3_GLYSO; Uncharacterized protein
TrEMBLK7MEG20.0K7MEG2_SOYBN; Uncharacterized protein
STRINGGLYMA16G00870.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-115TRF-like 6