PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G006500.3.p
Common NameGLYMA_16G006500, LOC100782501
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 647aa    MW: 71372.8 Da    PI: 6.7171
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G006500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.5e-08533581348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          +WT  E  +lv++v + G g+W+ I r        Rt  ++k++w+++l
  Glyma.16G006500.3.p 533 AWTLVEVIKLVEGVSRCGAGRWSEIKRLSFasySYRTSVDLKDKWRNLL 581
                          7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.948526585IPR017930Myb domain
SuperFamilySSF466891.3E-14528585IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-11528584IPR009057Homeodomain-like
SMARTSM007178.8E-8530583IPR001005SANT/Myb domain
CDDcd116605.54E-19532582No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0031627Biological Processtelomeric loop formation
GO:0046686Biological Processresponse to cadmium ion
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
METVVGIEDN DDGRFEDSGV DRSSSALSSP KQISNPIVYK LVRVEGDGKL VPATDDEVME  60
VGDFLEYENS EMHVVTNTGQ SLECISIERS SSGKLRLECL EGTAEADLGK LNAKLQILQK  120
VKEEEKHRIS CGSPVHSHEN IDSQCSADKF PVMDGKVQSE TPCQEIPSIA SSFNYTHSNQ  180
SGSIDQCSRP SEGVIESGSS ASAVYSNLKS DISMSDGEIC LDKLSIRELH ELFKVTFGRE  240
TTVKDKQWLK RRIAMSLTNS CDVSATTFII KDNKIVRKFE EDSSGNMNAG SLISSENMTE  300
EDVNFKDSSA VDACGIDDNQ VVSETRSENG LEYENYQTGQ RAAKRIRRPT KRYIEELSEN  360
ESREHNPRLS ISNKTVGFGH VSPTSNVRPA RNAFSEARTY STRLDSLGGS NVQIPCVSRV  420
RRSRPRKDIA SLMKFHPTGM GEAEKLSNKL LEHSSDAGSD FSDKVLKSRM PAKFHQPSSS  480
EPVKEQCPVI CPIELRQELR PKRADPSGHT SDDNNIVTVP TAKGGMRRKH HRAWTLVEVI  540
KLVEGVSRCG AGRWSEIKRL SFASYSYRTS VDLKDKWRNL LKASFALAPA DEGINSRKHG  600
TAPIPEKILL RVRELAEMNS QVPPNYSSSQ LASGGGSVHG DRSGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1420426RRSRPRK
2420427RRSRPRKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.242290.0cotyledon| flower| hypocotyl| leaf| root| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G006500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5607070.0FJ560707.1 Glycine max transcription factor MYB884 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547658.10.0uncharacterized protein LOC100782501 isoform X3
RefseqXP_028207047.10.0uncharacterized protein LOC114390506 isoform X3
TrEMBLA0A445GCP10.0A0A445GCP1_GLYSO; Uncharacterized protein
TrEMBLI1MJZ30.0I1MJZ3_SOYBN; Uncharacterized protein
STRINGGLYMA16G00870.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-112TRF-like 6