![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.16G004300.1.p | ||||||||
Common Name | GLYMA_16G004300, LOC100812983 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 362aa MW: 38250.4 Da PI: 7.3189 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 132.3 | 4.6e-41 | 24 | 127 | 4 | 113 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ Glyma.16G004300.1.p 24 PKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSsLNVSLRSSGSTLSAPpsks 113 699****************************************************************99977788888877554444333 PP TCP 89 .......kaaksaakskksqksaasalnlake 113 + l+la++ Glyma.16G004300.1.p 114 aphtfhgA------------------LALAHH 127 33333330..................333333 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-39 | 27 | 149 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.496 | 28 | 82 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001047 | Molecular Function | core promoter binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 362 aa Download sequence Send to blast |
MKKLTGGASS PASSSSLAIP TANPKRSTKD RHTKVDGRGR RIRMPATCAA RVFQLTRELG 60 HKSDGETIEW LLQQAEPAII AATGTGTIPA NFSSLNVSLR SSGSTLSAPP SKSAPHTFHG 120 ALALAHHPYE EAFQHPALLG FHPHAHQPQQ LLSADHIPES LPSGAGDSGD NYLRKRYRED 180 LFKDDNINNN NTQSQNESGD GDGSSPKLPK QQSEAGSGLL RPSNLLPATA MWAVAPSPAS 240 GPPGSTIWML PVTAGASSSA SSETQMWPFP QSVSGFMPRF NLPVPGALEF QGARAGSLQL 300 GSMSMPQQQH LGLAMSDSNL GMLAALNAYT RASLNVNSDH HQHQHQSQPS ESGEDDPNSS 360 Q* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.7638 | 0.0 | stem |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.16G004300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-132 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003548679.1 | 0.0 | transcription factor TCP8 | ||||
Refseq | XP_028208007.1 | 0.0 | transcription factor TCP8-like | ||||
Swissprot | Q9C518 | 4e-82 | TCP8_ARATH; Transcription factor TCP8 | ||||
TrEMBL | A0A445GCG7 | 0.0 | A0A445GCG7_GLYSO; Transcription factor TCP8 | ||||
TrEMBL | I1MJW9 | 0.0 | I1MJW9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G00580.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6077 | 30 | 50 | Representative plant | OGRP4591 | 10 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G58100.1 | 4e-68 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.16G004300.1.p |
Entrez Gene | 100812983 |
Publications ? help Back to Top | |||
---|---|---|---|
|