PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G273400.1.p
Common NameGLYMA_15G273400, LOC100789060
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 343aa    MW: 38492.2 Da    PI: 7.1945
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G273400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.26.7e-06187204320
                          ETTTTEEESSHHHHHHHH CS
              zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
                          C+ C+ksF+r  nL+ H+
  Glyma.15G273400.1.p 187 CHVCSKSFNRYNNLQMHM 204
                          *****************9 PP

2zf-C2H2157.2e-05269291123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y C +C+k+F  k + ++H +++
  Glyma.15G273400.1.p 269 YMCRKCDKTFAVKGDWRTHEKNC 291
                          89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.12E-5179207No hitNo description
SMARTSM003551.1185207IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-4185204IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471185212IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-4185204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280187207IPR007087Zinc finger, C2H2
SuperFamilySSF576671.93E-6252289No hitNo description
Gene3DG3DSA:3.30.160.602.3E-5265289IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035533269289IPR015880Zinc finger, C2H2-like
SMARTSM00355200295318IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MTDPKSNVYT ETFNFMPLYS HHSSFTSQSS LLSSYPLSYS NTNTNTFSNQ SDTSSSSCAA  60
PPPSSPLREA LPLINNIKQK KNEPSNGGEE VEEEGQKKRD IDETLLTSIT EEGDDDETVT  120
VALQIGLPSV ATSDLNGSRK IFEACAKMDV KEDVRVISGH PLDRLNNIQY WIPTPSQILI  180
GPTQFLCHVC SKSFNRYNNL QMHMWGHGSQ YRKGPDSLKG TQPSAMLRLP CFCCAPGCKH  240
NIDHPRTRPL KDFRTLQTHY KRKHGIKPYM CRKCDKTFAV KGDWRTHEKN CGITWYCLCG  300
SDFKHKRSLK DHIKAFGHDH GVVDIDCMQE DEAASEIEHD GG*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G273400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545973.10.0zinc finger protein WIP2
RefseqXP_028202067.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-109ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A445GZ600.0A0A445GZ60_GLYSO; Zinc finger protein WIP2
TrEMBLI1MJN00.0I1MJN0_SOYBN; Uncharacterized protein
STRINGGLYMA15G42870.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-109C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]