PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G271900.2.p | ||||||||
Common Name | GLYMA_15G271900, LOC100785696 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 456aa MW: 50487.9 Da PI: 5.4375 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.5 | 8.6e-12 | 373 | 418 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l P + k s a++L +Ave+Ik+Lq Glyma.15G271900.2.p 373 SIAERERRTRISERIKKLQDLFPRS----EKPTSTADMLDLAVEHIKDLQ 418 689*********************8....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.98 | 367 | 417 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.16E-14 | 370 | 431 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.27E-11 | 371 | 422 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.6E-13 | 372 | 426 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.8E-9 | 373 | 418 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-10 | 373 | 423 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MSVMYSPVLN YSDVEYQLWK NQDMDSSIGH PQQHCHQSNS GLLRYCSAPS SMLASLIDNT 60 IHGCVNEEPF TSENQQQQQH YLPSTSSEME TMLSKMPPSN IGWSNSEPLQ EFGGKPVKQE 120 IGQSVPQGPP KQNGYSYGGS QLIYQSQQIQ GLPNGSSIAS ISAFDGSFGA VNSMASEDSI 180 QSKMGVRNCS NLFRQKSSPA GFFSIENDLA ALREVGSFKD NDVSNGQATA STSGLHSSLT 240 FSSRSSSCLK QMPPQIAENG NESLEENYDQ SRNLVNDNGS SKCYIPSFTN EFWESSAFNA 300 PKTENEDEIM FSTSNGLESQ ETDFSYQNHG LTHHLSLPSS STKMSSIEMF LQIQGSVPYK 360 IRAKRGFATH PRSIAERERR TRISERIKKL QDLFPRSEKP TSTADMLDLA VEHIKDLQQQ 420 VQVQEKYSPI VRQSANVPGM RSITLELVPD LFTCR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22633 | 0.0 | flower| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G271900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU215941 | 0.0 | GU215941.1 Glycine max clone BAC GmWBb_74M16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014622875.1 | 0.0 | transcription factor bHLH130 isoform X3 | ||||
TrEMBL | A0A0R0GE08 | 0.0 | A0A0R0GE08_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G42680.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 4e-18 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G271900.2.p |
Entrez Gene | 100785696 |