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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G269600.2.p | ||||||||
Common Name | GLYMA_15G269600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 748aa MW: 81101.1 Da PI: 9.8056 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.6 | 1.9e-10 | 35 | 81 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrw 44 W t+E++ll++av+++G ++W+++a +++ + t+ +c ++ Glyma.15G269600.2.p 35 VWGTWEELLLACAVNRHGFKDWDAVAMEVQsrttrLLATAHHCEQKF 81 6*****************************88888888888887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-4 | 25 | 68 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.97E-5 | 31 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.2E-9 | 35 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.97E-6 | 36 | 67 | No hit | No description |
SMART | SM00297 | 8.4E-12 | 133 | 458 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 2.6E-18 | 343 | 456 | IPR001487 | Bromodomain |
SuperFamily | SSF47370 | 5.36E-18 | 356 | 458 | IPR001487 | Bromodomain |
Pfam | PF00439 | 4.5E-10 | 362 | 436 | IPR001487 | Bromodomain |
CDD | cd04369 | 5.26E-15 | 362 | 453 | No hit | No description |
PROSITE profile | PS50014 | 14.514 | 367 | 439 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 748 aa Download sequence Send to blast |
MENHQNHKVE SEPDIEKNHH HRHQQQQQQQ HRNEVWGTWE ELLLACAVNR HGFKDWDAVA 60 MEVQSRTTRL LATAHHCEQK FDDLSRRFAD QCNDDVPPSR QNGGAAAISD HVPWLDELRK 120 LRVAELRREV QRSDVSILSL QLEVKRLEEE KTKEKDGKDD KKPDLAVSGE LRPENDKTGG 180 EVDEAGPANS EPEERTANNT DKTLPTMGDE SDRENQSVNE SNSTGSRFEK TGDGDAKAGT 240 GPAPVQTGSI EPDPVLRKGK PVGEESNNGS YDALAKVPTC ESVPPSEERK VEEDDNSSEL 300 HDSVAHSGEG GTRESSEVQS SASLTRKRKT RRRKEVSGGG GASSPAENDE LATVKSEPLV 360 GVLELIKGHE HSSLFERRLE SQQDTDRYKD LVKQPMDLET IQLRLQKGHY SSCTSAFFRD 420 LLLLFTNATV FFSHDTLESQ VGRQLHRLAT TEMKNHGQAQ SDPIPRKNDS LPPNASLAKP 480 DSLISKNKAS GPILVCRKRS SMLAKPSSAT FGQKGDQPTF NDKKERPSSD AKPPMKPSSS 540 DTDEEELPKA KEKPVTGARS LRRSYKNLNN NNNKKPSSNS TPKTGSSGNK PSETVKPEKS 600 KAEGGPDKKR NAAADFLKRI KRNTSAEASK GGSGGSGGGG SGGGGGSSSS SKGGGGGNGV 660 KEQKKMVNNG KGDKGKERAS RHNNVGGGSG SGDKRNSKNV ENNSQSKRSV GRPPKKAAET 720 NAGSAKRGRE SSASAGKDKR PKKRSKK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 324 | 329 | TRKRKT |
2 | 327 | 334 | RKTRRRKE |
3 | 632 | 646 | SGGSGGGGSGGGGGS |
4 | 738 | 746 | KRPKKRSKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.18842 | 0.0 | flower| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G269600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014623573.1 | 0.0 | uncharacterized protein LOC100779988 isoform X1 | ||||
TrEMBL | A0A0R0GF96 | 0.0 | A0A0R0GF96_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G42440.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44430.1 | 7e-81 | DNA-binding bromodomain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G269600.2.p |