PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G269600.1.p
Common NameGLYMA_15G269600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 750aa    MW: 81388.5 Da    PI: 9.8602
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G269600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.9e-103783344
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrw 44
                          W t+E++ll++av+++G ++W+++a +++     +  t+ +c  ++
  Glyma.15G269600.1.p 37 VWGTWEELLLACAVNRHGFKDWDAVAMEVQsrttrLLATAHHCEQKF 83
                         6*****************************88888888888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-42770IPR009057Homeodomain-like
SuperFamilySSF466898.97E-53370IPR009057Homeodomain-like
PfamPF002493.2E-93783IPR001005SANT/Myb domain
CDDcd001678.23E-63869No hitNo description
SMARTSM002978.4E-12135460IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.6E-18345458IPR001487Bromodomain
SuperFamilySSF473705.36E-18358460IPR001487Bromodomain
PfamPF004394.5E-10364438IPR001487Bromodomain
CDDcd043695.28E-15364455No hitNo description
PROSITE profilePS5001414.514369441IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MRMENHQNHK VESEPDIEKN HHHRHQQQQQ QQHRNEVWGT WEELLLACAV NRHGFKDWDA  60
VAMEVQSRTT RLLATAHHCE QKFDDLSRRF ADQCNDDVPP SRQNGGAAAI SDHVPWLDEL  120
RKLRVAELRR EVQRSDVSIL SLQLEVKRLE EEKTKEKDGK DDKKPDLAVS GELRPENDKT  180
GGEVDEAGPA NSEPEERTAN NTDKTLPTMG DESDRENQSV NESNSTGSRF EKTGDGDAKA  240
GTGPAPVQTG SIEPDPVLRK GKPVGEESNN GSYDALAKVP TCESVPPSEE RKVEEDDNSS  300
ELHDSVAHSG EGGTRESSEV QSSASLTRKR KTRRRKEVSG GGGASSPAEN DELATVKSEP  360
LVGVLELIKG HEHSSLFERR LESQQDTDRY KDLVKQPMDL ETIQLRLQKG HYSSCTSAFF  420
RDLLLLFTNA TVFFSHDTLE SQVGRQLHRL ATTEMKNHGQ AQSDPIPRKN DSLPPNASLA  480
KPDSLISKNK ASGPILVCRK RSSMLAKPSS ATFGQKGDQP TFNDKKERPS SDAKPPMKPS  540
SSDTDEEELP KAKEKPVTGA RSLRRSYKNL NNNNNKKPSS NSTPKTGSSG NKPSETVKPE  600
KSKAEGGPDK KRNAAADFLK RIKRNTSAEA SKGGSGGSGG GGSGGGGGSS SSSKGGGGGN  660
GVKEQKKMVN NGKGDKGKER ASRHNNVGGG SGSGDKRNSK NVENNSQSKR SVGRPPKKAA  720
ETNAGSAKRG RESSASAGKD KRPKKRSKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326331TRKRKT
2329336RKTRRRKE
3634648SGGSGGGGSGGGGGS
4740748KRPKKRSKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.188420.0flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G269600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028203899.10.0uncharacterized protein LOC114387870 isoform X1
TrEMBLA0A0R0GF960.0A0A0R0GF96_SOYBN; Uncharacterized protein
STRINGGLYMA15G42440.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Representative plantOGRP38051123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.19e-81DNA-binding bromodomain-containing protein