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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G264000.1.p | ||||||||
Common Name | GLYMA_15G264000, LOC100811532 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 326aa MW: 36962.4 Da PI: 6.3451 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.6 | 2.6e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G ++W+++++ g+ R++k+c++rw +yl Glyma.15G264000.1.p 13 RGLWSPEEDEKLLRYINTHGQKSWSSVPKFAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.6 | 1.3e-17 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE+++++d ++ lG++ W+ Ia++++ gRt++++k++w++ Glyma.15G264000.1.p 66 RGSFTAEEEQIIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.178 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.81E-30 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-14 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.92E-12 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.468 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-26 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-16 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.4E-16 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.50E-12 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MGHRCCSKQK IKRGLWSPEE DEKLLRYINT HGQKSWSSVP KFAGLQRCGK SCRLRWINYL 60 RPDLKRGSFT AEEEQIIIDI HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGL 120 DPQTHTLLSS HRRSSVCTIS NIHQNSNSIF IMSSHIPNAP LENTSKTFST LPKPPANIVQ 180 IPSVDVSSEF QTTTSNNGEP RQHLTYELLM ENAITNICSP TYMNPSAVEL FNNDNNVNWV 240 STVNVEDFSA QTLEEGTQVQ VQVQHEKDKT CEDMGIDVRE ANNGNIETSA SFESSNFDFG 300 LLESVLTSEF ISYDFNCMDE LAWNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-31 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G264000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003545941.1 | 0.0 | transcription factor MYB86 | ||||
TrEMBL | K7ME19 | 0.0 | K7ME19_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G41810.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3466 | 32 | 67 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 2e-88 | myb domain protein 67 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G264000.1.p |
Entrez Gene | 100811532 |