PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G260500.1.p
Common NameGLYMA_15G260500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 307aa    MW: 35355 Da    PI: 5.009
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G260500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.21.2e-07181222955
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           r RR++i ++ ++L  l+P       +K++ ae+L  A +Y+k Lq
  Glyma.15G260500.1.p 181 ARERRRKITEKTQQLGNLIPGG-----PKMNTAEMLHAAAKYVKFLQ 222
                          699*****************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.277172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-12175233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.84E-7178225No hitNo description
SMARTSM003531.1E-9178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-11178230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-5182222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MMALSTYSNF DTTLQIPHLE TNTFHEAMPE VAAPNLQHFL PHSDESLFLS NALFENYIDP  60
TCDFLYTPEI NPFTSLTHHD DIFPTHEDYN LLPCPKRQKC CYEKNQQQEH VFFSLQELTT  120
STLPSNFLDR YAVPYDNNFS FQAEELQQQL YEVPQYGSTC VDLQCEKKGC ERIISPQSVA  180
ARERRRKITE KTQQLGNLIP GGPKMNTAEM LHAAAKYVKF LQAQVGMLEL MNTSEEYKAE  240
SHPENLHALV VSPFVQEKLY TEERCFVPKE IVTTLANHED LQSRPTILED LKQLIRTDIE  300
KKAKKE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G260500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006598645.10.0transcription factor bHLH52
TrEMBLK7ME050.0K7ME05_SOYBN; Uncharacterized protein
STRINGGLYMA15G41400.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Representative plantOGRP59691219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-30bHLH family protein