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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.15G254000.1.p |
Common Name | GLYMA_15G254000, Glyma15g40510.1, NAC35 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
NAC |
Protein Properties |
Length: 304aa MW: 34335.1 Da PI: 8.3725 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.15G254000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 166.6 | 8.4e-52 | 11 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lppGfrFhP+deelv++yL kkv++++ l + +vd++k+ePwd+p+++ + kewyf+++rd+kyatg r+nrat+sgyWkatgkd+
Glyma.15G254000.1.p 11 LPPGFRFHPRDEELVCDYLMKKVAHNDSLL---MINVDLNKCEPWDIPETACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDR 97
79***********************99544...789************7777799*********************************** PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
++l+ kg+lvg++ktLvfy+grapkg+kt+Wvmhe+r+
Glyma.15G254000.1.p 98 SILR-KGTLVGMRKTLVFYQGRAPKGNKTEWVMHEFRI 134
***9.999****************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 304 aa
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to blast |
MSNISMVEAK LPPGFRFHPR DEELVCDYLM KKVAHNDSLL MINVDLNKCE PWDIPETACV 60 GGKEWYFYTQ RDRKYATGLR TNRATASGYW KATGKDRSIL RKGTLVGMRK TLVFYQGRAP 120 KGNKTEWVMH EFRIEGPHGP PKISSSKEDW VLCRVFYKNR EVSAKPRMGS CYEDTGSSSL 180 PALMDSYISF DQTQTHADEF EQVPCFSIFS QNQTSPIFNH MATMEPKLPA NHATNAYGGA 240 PNLGYCLDPL SCDRKMLKAV LNQITKMERN PLNQSLKGSP SLGEGSSESY LSEVGMPHMW 300 NNY*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3swm_A | 7e-50 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 7e-50 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 7e-50 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 7e-50 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 7e-50 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 7e-50 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 7e-50 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 7e-50 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by auxin. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KT031221 | 0.0 | KT031221.1 Glycine max clone HN_CCL_172 NAC transcription factor (Glyma15g40510.1) mRNA, partial cds. |
Publications
? help Back to Top |
- Le Hénanff G, et al.
Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Chai C, et al.
Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547] - Xiao D, et al.
SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] - Huo X,Wang C,Teng Y,Liu X
Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] - Chen X, et al.
Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] - Liu C,Wang B,Li Z,Peng Z,Zhang J
TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]
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