PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G235000.2.p | ||||||||
Common Name | GLYMA_15G235000, LOC100790311 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SRS | ||||||||
Protein Properties | Length: 323aa MW: 35013.6 Da PI: 7.7249 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 175.7 | 2.1e-54 | 126 | 281 | 6 | 154 |
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstklssa 94 CqdCGn+ak+dC+++RCRtCCk rgfdC+thvkstWvp+++rr + + + +askr r+l +sk+ +a+s++++s+a Glyma.15G235000.2.p 126 RVCQDCGNRAKRDCSFRRCRTCCKGRGFDCSTHVKSTWVPVSHRRGGSNSGGDH----YDDDDGNASKRLRTLgSSKNVAATSHSSTSNA 211 47*******************************************964443333....33445566777777645667788889999999 PP DUF702 95 eskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++k+++tss lP++v+++avfrc rvs++ ge+e+aY ++v+i+GhvfkG+Lyd+G+++ Glyma.15G235000.2.p 212 TPTKSFDTSScqqdagfkqsLPRHVRAPAVFRCHRVSAIGSGEDEIAYMATVHISGHVFKGFLYDHGADT 281 99999999999999999999***********************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 5.0E-52 | 127 | 280 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.7E-24 | 127 | 169 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.3E-22 | 232 | 278 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MNMLGLRDLF LIAPTPSQLH HHQQHQHQNQ PISAEHHSNL PLPSQASLSV GLGIFPLLTV 60 PHTNDVHAQV QDCANNNTNN TNTNYWNLKM CGPTEVNSTR KGVMNMEDEG SNKQMMESEE 120 SGGEFRVCQD CGNRAKRDCS FRRCRTCCKG RGFDCSTHVK STWVPVSHRR GGSNSGGDHY 180 DDDDGNASKR LRTLGSSKNV AATSHSSTSN ATPTKSFDTS SCQQDAGFKQ SLPRHVRAPA 240 VFRCHRVSAI GSGEDEIAYM ATVHISGHVF KGFLYDHGAD TRNDVPSVSE LQLGNNGSGK 300 NTNRECSSAI GVPTSAYPAS VC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.36127 | 0.0 | flower| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G235000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097346 | 0.0 | BT097346.1 Soybean clone JCVI-FLGm-16G15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003546717.1 | 0.0 | protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | I1MIQ8 | 0.0 | I1MIQ8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G37600.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 8e-49 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G235000.2.p |
Entrez Gene | 100790311 |