PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.15G222100.1.p

Common Name

GLYMA_15G222100

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 370aa MW: 41577.7 Da PI: 5.1818

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.15G222100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.6	5.6e-10	64	108	1	45
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeek 45 +fYn+YA++vGFs+ + + ++ k +g i++ +f Cs+e +++++ Glyma.15G222100.1.p 64 SFYNAYARHVGFSTHVGQFNRAKPDGPIITWDFACSREVFKRKNI 108 5***************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.6E-8	64	109	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MDVEAVDEGE NSDRPVSENV ETGKGQEQNM TVNLAEREVN NQNGDAYRKP QVGMLFESED 60 AAKSFYNAYA RHVGFSTHVG QFNRAKPDGP IITWDFACSR EVFKRKNITI IPLFFRQYER 120 SLEHSLEKEI EADYETICNT PVLKTPSPME QQAANMYTKK IFAKFQEELV ETFAYTANNV 180 EDDGVISKYR VAKYVHDHKA YMVTLNISEM KVNCSCQMNA KSDIGTDEKI TDPIDIENLT 240 VRFNSLCREA IKLAEEGAVS VETYNATMNA LREGAKRVGI MKKNVAKVTP PNTQGNGSCL 300 KDHSKNSPSS ISDVIPSLWP WQDSVSHHFN LNDLGLPVTD LNTPSMAPVS IHRDGCPYLF 360 QVYDLDHLK*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MDVEAVDEGE NSDRPVSENV ETGKGQEQNM TVNLAEREVN NQNGDAYRKP QVGMLFESED  60
AAKSFYNAYA RHVGFSTHVG QFNRAKPDGP IITWDFACSR EVFKRKNITI IPLFFRQYER  120
SLEHSLEKEI EADYETICNT PVLKTPSPME QQAANMYTKK IFAKFQEELV ETFAYTANNV  180
EDDGVISKYR VAKYVHDHKA YMVTLNISEM KVNCSCQMNA KSDIGTDEKI TDPIDIENLT  240
VRFNSLCREA IKLAEEGAVS VETYNATMNA LREGAKRVGI MKKNVAKVTP PNTQGNGSCL  300
KDHSKNSPSS ISDVIPSLWP WQDSVSHHFN LNDLGLPVTD LNTPSMAPVS IHRDGCPYLF  360
QVYDLDHLK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.38507	0.0	meristem\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.15G222100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	1e-137	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003530369.1	1e-157	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_006585693.1	1e-157	protein FAR1-RELATED SEQUENCE 3 isoform X2
Refseq	XP_014634675.1	1e-157	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_014634676.1	1e-157	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_028244784.1	1e-157	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Refseq	XP_028244785.1	1e-157	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Refseq	XP_028244786.1	1e-157	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Refseq	XP_028244787.1	1e-157	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Refseq	XP_028244788.1	1e-157	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Refseq	XP_028244789.1	1e-157	protein FAR1-RELATED SEQUENCE 3-like isoform X2
Swissprot	Q9ZVC9	3e-73	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A0R0G4L3	0.0	A0A0R0G4L3_SOYBN; Uncharacterized protein
STRING	GLYMA15G34840.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	1e-75	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Glyma.15G222100.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]