PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ARR-B

Protein Properties

Length: 702aa MW: 76856.1 Da PI: 6.1364

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.15G206200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.7	6.2e-29	206	259	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G +kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl Glyma.15G206200.1.p 206 KPRVVWSVELHRKFVAAVNQL-GLDKAVPKKILDLMNVEGLTRENVASHLQKYRL 259 79*****************.******************************8 PP
2	Response_reg	83.6	6e-28	21	129	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl vdD+p+ +++l+++l+k +y +v+++ ++ eal++l+e++ +Dl++ D++mp++dG++ll+ e++lp+i+++ahg+ +++ + Glyma.15G206200.1.p 21 VLAVDDDPICLKVLENLLRKCQY-HVTTTNQAVEALKMLRENRnkFDLVISDVNMPDIDGFKLLELVGL-EMDLPVIMLSAHGDTKLVMK 108 799******************.***********999889***************87754.558************* PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ +eel + Glyma.15G206200.1.p 109 GVTHGACDYLLKPVRIEELKN 129 ****************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF036392	2.9E-164	1	700	IPR017053	Response regulator B-type, plant
SuperFamily	SSF52172	4.13E-36	18	142	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	6.5E-43	18	152	No hit	No description
SMART	SM00448	7.8E-34	19	131	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	44.038	20	135	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	2.6E-25	21	129	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	8.57E-29	22	134	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-30	203	263	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.009	203	262	IPR017930	Myb domain
SuperFamily	SSF46689	5.73E-20	204	263	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.6E-25	206	259	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-7	208	258	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence Send to blast
MAVEKQREDE GCDRFPVGMR VLAVDDDPIC LKVLENLLRK CQYHVTTTNQ AVEALKMLRE 60 NRNKFDLVIS DVNMPDIDGF KLLELVGLEM DLPVIMLSAH GDTKLVMKGV THGACDYLLK 120 PVRIEELKNI WQHVVRRKNF DSRDQNKASN EEKAPNIAGE GSQGLRSENS ADQNKRLGKK 180 RKDQSEEEEE DGEENGDDED PSAQKKPRVV WSVELHRKFV AAVNQLGLDK AVPKKILDLM 240 NVEGLTRENV ASHLQKYRLY LKKAAQQANM VAALGGSDSY LRMGSIDGYG DFCTSSGSGR 300 ITNTTSPSYA STGIFSRLNS PAALNMRAIS SSALIRPVQS QNINCSLNTL GNIQPSVFPA 360 NHSSSLLQGI PTSIELNQSK QSNCTTGISQ LSQVDSSGFA VASGFPDSRA TVNGPNNSLP 420 CVSNNHIMLQ GNPQQMHGPG AFRNQSSVRA ASLCAESFDA GLCSSSNLLD YNRCNENWQN 480 AAQLSKFPAH SLPLCEAFSN DQLPPTRINV SNSRTHIVNS PVDFSSRMGI SVPLEDTRNE 540 LACQEGLIGN IVKPSSYTPQ QRWEEHKLDY NQNVGHSFNP VNSHASSSGV KSSMGHGLNQ 600 NNTICSNRVD ASLVGQLNGA SPSISRCTEV EKFSSDIRLK PNEAYILEQM KSQDGFMQNT 660 FGTLDDIMGA MVKRTTMQEQ NELTLLDGEM GFDAYPVGSC N*

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence Send to blast

MAVEKQREDE GCDRFPVGMR VLAVDDDPIC LKVLENLLRK CQYHVTTTNQ AVEALKMLRE  60
NRNKFDLVIS DVNMPDIDGF KLLELVGLEM DLPVIMLSAH GDTKLVMKGV THGACDYLLK  120
PVRIEELKNI WQHVVRRKNF DSRDQNKASN EEKAPNIAGE GSQGLRSENS ADQNKRLGKK  180
RKDQSEEEEE DGEENGDDED PSAQKKPRVV WSVELHRKFV AAVNQLGLDK AVPKKILDLM  240
NVEGLTRENV ASHLQKYRLY LKKAAQQANM VAALGGSDSY LRMGSIDGYG DFCTSSGSGR  300
ITNTTSPSYA STGIFSRLNS PAALNMRAIS SSALIRPVQS QNINCSLNTL GNIQPSVFPA  360
NHSSSLLQGI PTSIELNQSK QSNCTTGISQ LSQVDSSGFA VASGFPDSRA TVNGPNNSLP  420
CVSNNHIMLQ GNPQQMHGPG AFRNQSSVRA ASLCAESFDA GLCSSSNLLD YNRCNENWQN  480
AAQLSKFPAH SLPLCEAFSN DQLPPTRINV SNSRTHIVNS PVDFSSRMGI SVPLEDTRNE  540
LACQEGLIGN IVKPSSYTPQ QRWEEHKLDY NQNVGHSFNP VNSHASSSGV KSSMGHGLNQ  600
NNTICSNRVD ASLVGQLNGA SPSISRCTEV EKFSSDIRLK PNEAYILEQM KSQDGFMQNT  660
FGTLDDIMGA MVKRTTMQEQ NELTLLDGEM GFDAYPVGSC N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	2e-25	202	265	1	64	ARR10-B
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	182	KRLGKKRKD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.55413	0.0	hypocotyl

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.15G206200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094204	0.0	BT094204.1 Soybean clone JCVI-FLGm-18G16 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014623661.1	0.0	two-component response regulator ARR12 isoform X1
Swissprot	Q6K8X6	1e-142	ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBL	A0A0R0G3R5	0.0	A0A0R0G3R5_SOYBN; Uncharacterized protein
STRING	GLYMA15G24770.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF956	34	112
Representative plant	OGRP292	17	120

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	1e-129	response regulator 12

Link Out ? help Back to Top
Phytozome	Glyma.15G206200.1.p
Entrez Gene	100776075

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]