PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G203900.1.p
Common NameGLYMA_15G203900, LOC100806899
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 476aa    MW: 49946.2 Da    PI: 6.451
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G203900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.7e-12264309555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Glyma.15G203900.1.p 264 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 309
                          99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.61E-13257313No hitNo description
SuperFamilySSF474595.89E-17257319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16261318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9264309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MQPCSKEMQG LNSLLNSSSQ ISLQDLQNHT TNQIQNSHMN HQHQLAHFDS TSHDDFLEQM  60
LSSCSWTDLN PNKPLLWDPN TLNDIKPPDE TTPSNNNNDA TTNVASFSSF DEHSTLASKF  120
RNHQISSNNN APKNAAAAAL MLQHQLLRDS GLLNMPLSLP GNDVVVDAST FESPNPSGKA  180
SVQTFYNGFA GSLHGVGQSS NQTQHFQHPQ GSSNPMQGQN FGAVPAGGGS ATNQAPASGA  240
AAGGAPAQPR QRVRARRGQA TDPHSIAERL RRERIAERMK ALQELVPNAN KTDKASMLDE  300
IIDYVKFLQL QVKVLSMSRL GGAAAVAPLV ADMSSEGGGD CIQANGKSNG GGAQASTTNT  360
NTNQTTATTT SNDSLTMTEH QVAKLMEEDM GSAMQYLQGK GLCLMPISLA TAISTATCPT  420
RNVNVNPLIN AAAGATHFPT AANPAGEGPS SPSMSVLTVQ SAIAGNDGAA SVSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268273RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.308820.0flower| hypocotyl| leaf| meristem| pod| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G203900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546668.10.0transcription factor bHLH82
TrEMBLI1MIE10.0I1MIE1_SOYBN; Uncharacterized protein
STRINGGLYMA15G33020.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.19e-53LJRHL1-like 1