PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G202200.1.p
Common NameGLYMA_15G202200, LOC100816347
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 371aa    MW: 41545.1 Da    PI: 5.4314
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G202200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.6e-073083402254
                          SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           +yp++e++++L +++gL+ +q+ +WF N+R +
  Glyma.15G202200.1.p 308 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 340
                          59*****************************87 PP
2ELK29.51.7e-10261282122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y+ +++++++E++
  Glyma.15G202200.1.p 261 ELKHELKQGYKDKIVDIREEIL 282
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-1895139IPR005540KNOX1
PfamPF037902.4E-1797138IPR005540KNOX1
SMARTSM012566.6E-27149204IPR005541KNOX2
PfamPF037912.5E-19153203IPR005541KNOX2
PfamPF037891.2E-5261282IPR005539ELK domain
SMARTSM011885.1E-4261282IPR005539ELK domain
PROSITE profilePS512139.969261281IPR005539ELK domain
PROSITE profilePS5007111.612281344IPR001356Homeobox domain
SuperFamilySSF466895.56E-16283347IPR009057Homeodomain-like
SMARTSM003891.2E-10283348IPR001356Homeobox domain
CDDcd000862.54E-11284345No hitNo description
Gene3DG3DSA:1.10.10.606.2E-25288345IPR009057Homeodomain-like
PfamPF059209.9E-18301340IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MAFHDHLPHE ITFQPFTEEQ QLGQSRDMQR LLPLSGGAPT WLNNSTAATL RQQNFLHLQP  60
ESAATTQQND DVRGGGGSGM DRNRTESNSE PDDLAEYKAD ILGHPLYDQL LSAHVSCLRI  120
ATPVDQLPRI DAQLQQSQRV VDKYSGIGNG NGVVDDKELD QFMTHYVILL CAFKEQLQQH  180
VRVHAMEAVM ACWELEQSLQ SLTGVSPGEG TGATMSDDEE DQAESNANLF EGSMDGADSL  240
SFGPLVPTET ERSLMERVRQ ELKHELKQGY KDKIVDIREE ILRKRRAGKL PGDTTSLLKA  300
WWQSHSKWPY PTEEDKARLV QETGLQLKQI NNWFINQRKR NWHTNPSSSS GSKSKRKSSG  360
AGETSNQSFM *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.180060.0cotyledon| meristem| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G202200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014623630.10.0homeobox protein knotted-1-like 2 isoform X1
RefseqXP_028203848.10.0homeobox protein knotted-1-like 2 isoform X1
SwissprotP480001e-164KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0R0GC110.0A0A0R0GC11_SOYBN; Uncharacterized protein
TrEMBLA0A445GW890.0A0A445GW89_GLYSO; Homeobox protein knotted-1-like 3 isoform A
STRINGGLYMA09G12820.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-161KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]