PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G192000.1.p
Common NameGLYMA_15G192000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LSD
Protein Properties Length: 203aa    MW: 21883.5 Da    PI: 8.5471
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G192000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.55.1e-143357125
              zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                         C+gCr++L YPrGA++V+CalC+tV
  Glyma.15G192000.1.p 33 CNGCRNILVYPRGATNVCCALCNTV 57
                         ************************9 PP
2zf-LSD145.61.2e-147296125
              zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                         CggC tlL+Y+rGA+sVRC++C+t+
  Glyma.15G192000.1.p 72 CGGCTTLLMYTRGATSVRCSCCHTI 96
                         ***********************97 PP
3zf-LSD141.81.8e-13110132123
              zf-LSD1   1 CggCrtlLsYPrGApsVRCalCd 23 
                          C +Crt+L+YP+GA+sV+Ca+C 
  Glyma.15G192000.1.p 110 CTNCRTTLMYPYGASSVKCAICR 132
                          99********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.1E-133060IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-113357IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.6E-156999IPR005735Zinc finger, LSD1-type
PfamPF069433.7E-127296IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.7E-11108136IPR005735Zinc finger, LSD1-type
PfamPF069437.4E-13110134IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MFLSHFRQIS FNFIIIIIII SWGFWFMGSQ LVCNGCRNIL VYPRGATNVC CALCNTVTSV  60
PPPGMDMSQL YCGGCTTLLM YTRGATSVRC SCCHTINLVP VLESNQVIHC TNCRTTLMYP  120
YGASSVKCAI CRYITNVSMT NGRLPIPVQR PNGTANSGTV SSTSSSMPHS QSQTVVVENP  180
MSVDSSGKLV SNVVVGVTTE KK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.204490.0flower| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, roots, rosette leaves, stems, inflorescences and flowers. {ECO:0000269|PubMed:20456049}.
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269|PubMed:10550898, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11844114, ECO:0000269|PubMed:12732715, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18790826, ECO:0000269|PubMed:20456049, ECO:0000269|PubMed:21097903}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G192000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By methyl viologen. {ECO:0000269|PubMed:20456049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546559.11e-124protein LSD1 isoform X2
RefseqXP_028202517.11e-124protein LSD1-like isoform X2
SwissprotP940771e-70LSD1_ARATH; Protein LSD1
TrEMBLA0A0R0G3371e-144A0A0R0G337_SOYBN; Uncharacterized protein
STRINGGLYMA15G22140.11e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40273361
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.73e-70LSD family protein
Publications ? help Back to Top
  1. Spedaletti V, et al.
    Characterization of a lysine-specific histone demethylase from Arabidopsis thaliana.
    Biochemistry, 2008. 47(17): p. 4936-47
    [PMID:18393445]
  2. Szechyńska-Hebda M,Czarnocka W,Hebda M,Bernacki MJ,Karpiński S
    PAD4, LSD1 and EDS1 regulate drought tolerance, plant biomass production, and cell wall properties.
    Plant Cell Rep., 2016. 35(3): p. 527-39
    [PMID:26754794]
  3. Czarnocka W, et al.
    The dual role of LESION SIMULATING DISEASE 1 as a condition-dependent scaffold protein and transcription regulator.
    Plant Cell Environ., 2017. 40(11): p. 2644-2662
    [PMID:28555890]
  4. Bernacki MJ, et al.
    LSD1-, EDS1- and PAD4-dependent conditional correlation among salicylic acid, hydrogen peroxide, water use efficiency and seed yield in Arabidopsis thaliana.
    Physiol Plant, 2019. 165(2): p. 369-382
    [PMID:30461017]