PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 564aa MW: 65577.7 Da PI: 8.3807

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.15G184200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.2	1.1e-12	60	149	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkek.dgkwevtkle 82 +fYn++Ak+ GF +r+++sk + + +vC +eg+++ + ++ r+ ++ rt+C+a+ v++ + ++w++++++ Glyma.15G184200.1.p 60 EFYNSFAKKNGFGIRIRSSKPK-------MTVLVCCCEGQHKVKGLVdkdthdnICQSIRKCSTLRTSCQASPIVSRGDiASNWVIKSFS 142 6**************98877.......678999999998877655555665556667788999**********9****** PP FAR1 83 leHnHel 89 ++HnH + Glyma.15G184200.1.p 143 NDHNHVM 149 ***87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-10	60	149	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence Send to blast
MTDTLGNIEI QEIESINVMP MDTPIPYGEV MPGDTSNDAE ELNIQPCLGL EFESLEKVRE 60 FYNSFAKKNG FGIRIRSSKP KMTVLVCCCE GQHKVKGLVD KDTHDNICQS IRKCSTLRTS 120 CQASPIVSRG DIASNWVIKS FSNDHNHVML SPKSVCYMRC HKKMSVVAQS LVEKFEEEGL 180 LTGKVASIFN NSDSYFSDRD CWNHIRNLRR KNLDLGDVEV VFNYCKRKQV ENPNFFYEIQ 240 CDDDSRMVNF LWVDARSRVA YQKFGDVITF DTTYKTNKYN ESEKSFTWLF QTWLEAMGGK 300 KSVSIITNQD LTIGVAIKKS TFKRELKRCI RESPCIAIFE EEWKRLMKEY NLEGNEWLQG 360 LYRIKESWIP IFNRSTFFAG MNTTQRSEGI NAFFDSFVHS RTRLQEFVVN FEKAVDCRLE 420 AKEREDYKSR HKSRILSTGS KVEHHAEFFY TRNVFGKFQD ELRKVNEFTK KKIRRDGPSH 480 VYQTQRLLNV TANFLNLWGY CVDTLVIFQA KGVVQIPDHF VLQCWTKDAN KFIEVSDVEN 540 NFDGQSTTSR ILRRMHAQVK RDI*

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence Send to blast

MTDTLGNIEI QEIESINVMP MDTPIPYGEV MPGDTSNDAE ELNIQPCLGL EFESLEKVRE  60
FYNSFAKKNG FGIRIRSSKP KMTVLVCCCE GQHKVKGLVD KDTHDNICQS IRKCSTLRTS  120
CQASPIVSRG DIASNWVIKS FSNDHNHVML SPKSVCYMRC HKKMSVVAQS LVEKFEEEGL  180
LTGKVASIFN NSDSYFSDRD CWNHIRNLRR KNLDLGDVEV VFNYCKRKQV ENPNFFYEIQ  240
CDDDSRMVNF LWVDARSRVA YQKFGDVITF DTTYKTNKYN ESEKSFTWLF QTWLEAMGGK  300
KSVSIITNQD LTIGVAIKKS TFKRELKRCI RESPCIAIFE EEWKRLMKEY NLEGNEWLQG  360
LYRIKESWIP IFNRSTFFAG MNTTQRSEGI NAFFDSFVHS RTRLQEFVVN FEKAVDCRLE  420
AKEREDYKSR HKSRILSTGS KVEHHAEFFY TRNVFGKFQD ELRKVNEFTK KKIRRDGPSH  480
VYQTQRLLNV TANFLNLWGY CVDTLVIFQA KGVVQIPDHF VLQCWTKDAN KFIEVSDVEN  540
NFDGQSTTSR ILRRMHAQVK RDI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.15G184200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024634520.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0R0G2U3	0.0	A0A0R0G2U3_SOYBN; Uncharacterized protein
STRING	GLYMA15G20510.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15798	3	5
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-92	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Glyma.15G184200.1.p