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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G181000.2.p | ||||||||
Common Name | GLYMA_15G181000, LOC100815277 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 1123aa MW: 125284 Da PI: 6.6435 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.6 | 1e-22 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F Glyma.15G181000.2.p 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI 213 99*****************************954.4444.48************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++++l++++ r+ Glyma.15G181000.2.p 214 --RDEKQQLLLGIKRA 227 ..55788889988775 PP | |||||||
2 | Auxin_resp | 121.3 | 7.4e-40 | 252 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaas++s+F+++YnPras+seFv++ +k++kal+++ s+GmRf+m+fete+s rr++Gt++g++d+dpvrW+nS+Wr+L+ Glyma.15G181000.2.p 252 AAHAASNNSPFTIFYNPRASPSEFVIPSAKYNKALYNHASLGMRFRMMFETEESGVRRYMGTITGITDVDPVRWKNSQWRNLQ 334 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-44 | 116 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-41 | 118 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.81E-20 | 125 | 217 | No hit | No description |
SMART | SM01019 | 1.7E-23 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.8E-21 | 126 | 227 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.182 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.1E-35 | 252 | 334 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.4E-9 | 992 | 1081 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.755 | 995 | 1088 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.5E-8 | 1009 | 1073 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1123 aa Download sequence Send to blast |
MKAPPSGYLP NSGEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE 60 ADFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYDKEAIL ASDMGLKQNQ 120 QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDNTWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKQQL LLGIKRANRQ QPALSSSVIS 240 SDSMHIGILA AAAHAASNNS PFTIFYNPRA SPSEFVIPSA KYNKALYNHA SLGMRFRMMF 300 ETEESGVRRY MGTITGITDV DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP 360 FYICPPPFFR PKFPKEPGMP DDESDIENAF KRAMPWLGDD LGMKDASSSV FPGFSLMQWM 420 SMQQNNQFSA AQSGFIPPSM LSSNALHGNL TTDDPSKLLS FQAPVLSSPN LQFNKPNLAN 480 QVNQLQQSPT SWPPQQQQQQ QKLQSMLQTP LNPLQQQQQQ RQQQLPVPQN LSQPQQQQPQ 540 MPQQRAQQPQ QQQQQSCQQT IMSNGTVASN QIPNQCVQQP VTYSQLQQQQ LLSGSIPPQQ 600 SFQSPNKNAL LMTSLPQDSQ FQQQIDQQAS LLQRQQQQQT QLQSSPLQLL QQSLSQRASQ 660 QPQMTQMCQQ NSSEQQPQLQ LLQKLQQQQQ QQQQQQQQQL LSTSSPLLQS QLLHQQNTHQ 720 QNQQLPQLPL SQGHQPQQLG NNAFSMEKLL NGNNYSTSSL MQTQQLSVNQ PHNTQKSLTN 780 TRAPSTLTDG DAPSCSTSPS TNNCQISPNL MKRNQHVPAT LGGPSVLEPT NHLMQGLHSK 840 SEMQIKHELP SVRGTDQLKF KGTVADQMEA SSGTSYCIDP NNIHQNFPLP NFCMDGDVQS 900 NPRNNLPFAS NLDGLTPDTF LSRGYDSQKD LQNLLSNYGG APRDIETELS TAALSPQPFG 960 VPGIPFKPGC SSDIAINDPG VLNNGLWANQ TQRMRTYTKV QKCGSVGRCI DVTRYKGYDE 1020 LRHDLARMFG IEGQLEDPQR TEWKLVYVDH ENDILLVGDD PWEEFVSCVQ SIKILSSAEV 1080 QKMSLDGDLG HVPVPNQACS GTDNGNAWRG QYEDNSAASF NR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-169 | 15 | 355 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.51583 | 0.0 | cotyledon |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G181000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003546519.1 | 0.0 | auxin response factor 19 | ||||
TrEMBL | K7MC63 | 0.0 | K7MC63_SOYBN; Auxin response factor | ||||
STRING | GLYMA15G19980.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G181000.2.p |
Entrez Gene | 100815277 |