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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G166800.1.p | ||||||||
Common Name | GLYMA_15G166800, LOC100817061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 27783.9 Da PI: 6.0621 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.6 | 2.5e-14 | 54 | 97 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++++ Lr+++P+ + K++Ka+i + A++YI++L+ Glyma.15G166800.1.p 54 VSERNRRKKLNERLFALRSVVPNiS------KMDKASIIKDAIDYIQHLH 97 57*********************66......*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.939 | 47 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-18 | 48 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.09E-13 | 50 | 101 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.1E-17 | 53 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.0E-16 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.3E-12 | 54 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MENIGEEYKH YWETNMFLQT QELGSWGLDE ALSGYYDSSS PDGAASSAAS KNIVSERNRR 60 KKLNERLFAL RSVVPNISKM DKASIIKDAI DYIQHLHEQE KIIQAEIMEL ESGMPKKSPS 120 YDFEQELLPV VLRSKKKRTE QLYDCVTSRN SPIEVLELRV THMGEKIVVV SLTCSKRTDT 180 MVKLCEVFES LKLKIITANI TSFSDRLLKI VFIEANEDEK DHLQIKIQTA IKALNDPLNP 240 MSI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.55103 | 0.0 | flower| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G166800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031269 | 0.0 | KT031269.1 Glycine max clone HN_CCL_85 bHLH transcription factor (Glyma15g18070.1_like1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003546437.1 | 0.0 | transcription factor bHLH35 | ||||
Refseq | XP_028203644.1 | 0.0 | transcription factor bHLH35-like | ||||
Swissprot | Q2HIV9 | 8e-92 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A0B2Q182 | 1e-179 | A0A0B2Q182_GLYSO; Transcription factor bHLH35 | ||||
TrEMBL | I1MH41 | 1e-179 | I1MH41_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G18070.1 | 1e-180 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Representative plant | OGRP2753 | 13 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 4e-84 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G166800.1.p |
Entrez Gene | 100817061 |