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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G159200.1.p | ||||||||
Common Name | GLYMA_15G159200, LOC100797513 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 122aa MW: 13986.5 Da PI: 4.5098 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.5e-18 | 11 | 61 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g++ AeIrdp++ r +lg+f+taeeAa+a+++a+ l+g Glyma.15G159200.1.p 11 KYRGVRRRP-WGKFGAEIRDPTKpT---GRQWLGTFDTAEEAARAYDRAAIGLRG 61 8********.**********97744...688*******************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.4E-11 | 11 | 61 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-22 | 11 | 71 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-30 | 11 | 71 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-32 | 11 | 75 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.512 | 11 | 69 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.04E-29 | 12 | 70 | No hit | No description |
PRINTS | PR00367 | 6.4E-11 | 12 | 23 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-11 | 35 | 51 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MEKEKGEEEV KYRGVRRRPW GKFGAEIRDP TKPTGRQWLG TFDTAEEAAR AYDRAAIGLR 60 GALAILNFPD EYYSHLPFVL SNSSTKGNES SFDTEVIELE YLDDKVLEEL LELEEKRRNE 120 D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-29 | 6 | 106 | 9 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.36612 | 1e-151 | epicotyl |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G159200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT091458 | 1e-148 | BT091458.1 Soybean clone JCVI-FLGm-8C21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003546400.1 | 2e-83 | ethylene-responsive transcription factor ERF098 | ||||
Refseq | XP_028203094.1 | 2e-83 | ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 3e-39 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A445GUH5 | 4e-82 | A0A445GUH5_GLYSO; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | I1MGW6 | 4e-82 | I1MGW6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G17100.1 | 7e-83 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 7e-17 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G159200.1.p |
Entrez Gene | 100797513 |
Publications ? help Back to Top | |||
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