PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ARR-B

Protein Properties

Length: 673aa MW: 73650.7 Da PI: 6.3622

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.15G145200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.9	4.7e-28	207	260	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++F+ av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl Glyma.15G145200.1.p 207 KPRVVWSVELHQQFMAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 260 79*****************.******************************8 PP
2	Response_reg	74.5	4.1e-25	31	139	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl+vdD+p+ +++l+++l+ y ev+ ++ +e al ll+e++ +D++l D+ mp+mdG++ll++i e +lp+i+++a + + + + Glyma.15G145200.1.p 31 VLVVDDDPTCLMILERMLRACLY-EVTKCQRAEVALSLLRENKngFDIVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKHVVMK 118 89***************9999.***********999999******************6654.8************* PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ +e+l + Glyma.15G145200.1.p 119 GVTHGACDYLIKPVRIEALKN 139 ***************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF036392	1.1E-176	5	664	IPR017053	Response regulator B-type, plant
Gene3D	G3DSA:3.40.50.2300	4.8E-41	28	172	No hit	No description
SuperFamily	SSF52172	4.84E-35	28	149	IPR011006	CheY-like superfamily
SMART	SM00448	1.2E-29	29	141	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	42.106	30	145	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	1.5E-22	31	139	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	1.07E-27	32	145	No hit	No description
SuperFamily	SSF46689	5.02E-20	204	264	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.888	204	263	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.7E-30	206	265	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-24	207	260	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-7	209	259	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence Send to blast
MNLSNGKGST SSSPLKAGDS VSDQFPAGLR VLVVDDDPTC LMILERMLRA CLYEVTKCQR 60 AEVALSLLRE NKNGFDIVLS DVHMPDMDGF KLLEHIGLEM DLPVIMMSAD DGKHVVMKGV 120 THGACDYLIK PVRIEALKNI WQHVIRKRKN GLRDVEQSGS VEEGDQPPKV SDDGDYSSSV 180 NEARSSKKRR DEDEEGDEKD DSSTLKKPRV VWSVELHQQF MAAVNQLGID KAVPKKILEL 240 MNVPGLTREN VASHLQKYRL YLRRLSGVSQ QQGNLNNSFM SSQEATFGGT SINGIDLQTL 300 SAAGQFPSQS LAKLQATGLG RTTAKAGVPM PLSDQKNLFS FENPRLRFGE GSLQHLSNSK 360 PINLLHGIPT NMEPKQLANL HQSTQPLGSL NMRVNAPVTQ NNPLLMQMAQ SQPRGQMLGE 420 NAGSHVTRFP SSLVQPTVSN GISNGVLGNG IAGTSNITTY NPVQQNSSLL SFPMNQTNEI 480 SVSNFPLRSS PGITSITNKG MFHEEGTSGI KGPGGFVQGY DMFNELHHQK SHDWDLTNTG 540 MTYDAAHHAN PLQGNIDVSP SVLVHQSFPT MHQTVQNRDT TSIGKAMFST GEGMHQSNLQ 600 NVGQHHNNLL LDNSVRVKAE RIPDPSCQIN NLFADQYGQE DLVSAFLKQQ ESIGTSENEF 660 DFDGYSLDNI PV*

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence Send to blast

MNLSNGKGST SSSPLKAGDS VSDQFPAGLR VLVVDDDPTC LMILERMLRA CLYEVTKCQR  60
AEVALSLLRE NKNGFDIVLS DVHMPDMDGF KLLEHIGLEM DLPVIMMSAD DGKHVVMKGV  120
THGACDYLIK PVRIEALKNI WQHVIRKRKN GLRDVEQSGS VEEGDQPPKV SDDGDYSSSV  180
NEARSSKKRR DEDEEGDEKD DSSTLKKPRV VWSVELHQQF MAAVNQLGID KAVPKKILEL  240
MNVPGLTREN VASHLQKYRL YLRRLSGVSQ QQGNLNNSFM SSQEATFGGT SINGIDLQTL  300
SAAGQFPSQS LAKLQATGLG RTTAKAGVPM PLSDQKNLFS FENPRLRFGE GSLQHLSNSK  360
PINLLHGIPT NMEPKQLANL HQSTQPLGSL NMRVNAPVTQ NNPLLMQMAQ SQPRGQMLGE  420
NAGSHVTRFP SSLVQPTVSN GISNGVLGNG IAGTSNITTY NPVQQNSSLL SFPMNQTNEI  480
SVSNFPLRSS PGITSITNKG MFHEEGTSGI KGPGGFVQGY DMFNELHHQK SHDWDLTNTG  540
MTYDAAHHAN PLQGNIDVSP SVLVHQSFPT MHQTVQNRDT TSIGKAMFST GEGMHQSNLQ  600
NVGQHHNNLL LDNSVRVKAE RIPDPSCQIN NLFADQYGQE DLVSAFLKQQ ESIGTSENEF  660
DFDGYSLDNI PV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	2e-22	206	266	4	64	ARR10-B
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.19639	0.0	flower\| root\| seed coat

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269\|PubMed:11370868, ECO:0000269\|PubMed:15173562, ECO:0000269\|PubMed:9891419}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269\|PubMed:11370868, ECO:0000269\|PubMed:11574878, ECO:0000269\|PubMed:15282545, ECO:0000269\|PubMed:16407152}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.15G145200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003546340.1	0.0	two-component response regulator ARR2
Refseq	XP_028204398.1	0.0	two-component response regulator ARR2-like isoform X1
Swissprot	Q9ZWJ9	0.0	ARR2_ARATH; Two-component response regulator ARR2
TrEMBL	A0A445GTV5	0.0	A0A445GTV5_GLYSO; Two-component response regulator
TrEMBL	I1MGI9	0.0	I1MGI9_SOYBN; Two-component response regulator
STRING	GLYMA15G15520.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3958	34	58
Representative plant	OGRP292	17	120

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.2	0.0	response regulator 1

Link Out ? help Back to Top
Phytozome	Glyma.15G145200.1.p
Entrez Gene	100809583

Publications ? help Back to Top
Takahashi N, et al. Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots. Curr. Biol., 2013. 23(18): p. 1812-7 [PMID:24035544] Ge XM, et al. Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis. Plant J., 2015. 82(1): p. 138-50 [PMID:25704455] Takahashi N,Umeda M Cytokinins promote onset of endoreplication by controlling cell cycle machinery. Plant Signal Behav, 2014. 9(8): p. e29396 [PMID:25763620] Kobayashi K, et al. Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling. Plant Physiol., 2017. 173(4): p. 2340-2355 [PMID:28193764] Arnaud D, et al. Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis. Plant Cell, 2017. 29(3): p. 543-559 [PMID:28254779] Zhang TQ, et al. A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration. Plant Cell, 2017. 29(5): p. 1073-1087 [PMID:28389585] Meng WJ, et al. Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL. Plant Cell, 2017. 29(6): p. 1357-1372 [PMID:28576846] Zhang F,May A,Irish VF Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL. Trends Plant Sci., 2017. 22(10): p. 815-817 [PMID:28886911] Takatsuka H,Higaki T,Umeda M Actin Reorganization Triggers Rapid Cell Elongation in Roots. Plant Physiol., 2018. 178(3): p. 1130-1141 [PMID:30185441]