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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G144000.1.p | ||||||||
Common Name | GLYMA_15G144000, LOC100819736 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 331aa MW: 37140.5 Da PI: 4.927 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.8 | 1.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEd++l d++++ G g+Wkt ++ g+ R++k+c++rw +yl Glyma.15G144000.1.p 14 KGRWTAEEDKILTDYIQENGEGSWKTLPKNAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.9 | 2e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE+e++v++++ lG++ W+ Ia +++ gRt++++k++w+++l Glyma.15G144000.1.p 67 RGNITPEEEEIIVKLHAVLGNR-WSVIAGRLP-GRTDNEIKNYWNSHL 112 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.373 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.46E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.06E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.755 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.00E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MGRSPCCEKV GLKKGRWTAE EDKILTDYIQ ENGEGSWKTL PKNAGLLRCG KSCRLRWINY 60 LRADVKRGNI TPEEEEIIVK LHAVLGNRWS VIAGRLPGRT DNEIKNYWNS HLRRKIYCFM 120 RSLNESLPPT DMAAVNSATS KRRVRGSRNK PATEEEKNMA LSQNSFESMP SCNREEGEEI 180 SMMDACYEME SITISSTFAS CPSLEASLGP YHHWSDDEIM KLSNMFENGV LVNPSGNNVT 240 LKDEPNGIEC GQMNVDIMGT DQSKNNASNG DSGEWYPNCS SVNSAIDYQW SDWDMGGSVQ 300 SNNQWNLCDD QVMNCLWSTG IGEINYGFHP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.15808 | 0.0 | cotyledon |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G144000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003547366.1 | 0.0 | transcription repressor MYB6 | ||||
Refseq | XP_028203769.1 | 0.0 | transcription repressor MYB6-like | ||||
TrEMBL | A0A445GTJ5 | 0.0 | A0A445GTJ5_GLYSO; Transcription factor MYB111 | ||||
TrEMBL | K7MBB9 | 0.0 | K7MBB9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G15400.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 3e-75 | myb domain protein 111 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G144000.1.p |
Entrez Gene | 100819736 |