PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G135100.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 300aa    MW: 33107 Da    PI: 10.3543
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G135100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.4e-12556147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                         +++WT+eE++ l+ +v ++G g W+tI +          R+  ++k++w+++
  Glyma.15G135100.1.p  5 KQKWTAEEEQALKAGVVKHGVGKWRTILKDPEfsgvlYLRSNVDLKDKWRNL 56
                         79***********************************88***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.947158IPR017930Myb domain
SuperFamilySSF466891.86E-16271IPR009057Homeodomain-like
SMARTSM007171.7E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-13456IPR009057Homeodomain-like
PfamPF002491.8E-8556IPR001005SANT/Myb domain
CDDcd116607.07E-19656No hitNo description
SMARTSM005262.4E-10118183IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.61E-15118197IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.2E-13119188IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.418120188IPR005818Linker histone H1/H5, domain H15
PfamPF005386.3E-8123181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031627Biological Processtelomeric loop formation
GO:0046686Biological Processresponse to cadmium ion
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGAPKQKWTA EEEQALKAGV VKHGVGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNLSVMA  60
NGWSSREKSR LSVRRVHQVP RQDENSMAIT PVVPSDEEIV DVKPLQVSRD IVHIPGPKRS  120
NLSLDKLIME AITSLKENGG SNKTAIAAFI EDQYWALPGL KSMLSAKLKF LTASGKLIKV  180
NRKYRIAPIA AYSDRRRNSS MLYLKGRQKA SMKIDRDETN ILTRSQIDLE LEKIRSMTPQ  240
EAAAFAARAV AEAEAAIAEA EEAAKEAEAA EADAEAAQAF ADATTKSAKG RKSPKRIHT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.328340.0cotyledon| epicotyl| meristem| seed coat| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G135100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0983180.0BT098318.1 Soybean clone JCVI-FLGm-23G7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546290.10.0telomere repeat-binding factor 1 isoform X2
RefseqXP_006597673.20.0telomere repeat-binding factor 1 isoform X1
RefseqXP_028204580.10.0telomere repeat-binding factor 1-like isoform X1
RefseqXP_028204581.10.0telomere repeat-binding factor 1-like isoform X2
SwissprotQ8VWK41e-97TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A445GT910.0A0A445GT91_GLYSO; Telomere repeat-binding factor 1 isoform A
TrEMBLI1MG870.0I1MG87_SOYBN; Uncharacterized protein
STRINGGLYMA15G14320.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.38e-99telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]