PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G125400.1.p
Common NameGLYMA_15G125400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 669aa    MW: 77215.3 Da    PI: 7.314
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G125400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.71.2e-2061144189
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          ++Y  YAkevGF+vr+++s  +++++e + + ++Cs +g+++ ++ +     + r+etrtgC a++++++ ++++w+v ++ leHnH l
  Glyma.15G125400.1.p  61 NYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----HLRKETRTGCPAMIRMRLVESQRWRVLEVMLEHNHML 144
                          5899***************************************9988.....999********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.4E-1861144IPR004330FAR1 DNA binding domain
PfamPF105513.0E-28263356IPR018289MULE transposase domain
PfamPF044341.6E-4539582IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.644550586IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6561588IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MEESSLCCEQ LPDGECIEVQ KDEEDDGLIE LDCQNGFPEG RKEFVAPAVG MEFESYDDAY  60
NYYICYAKEV GFRVRVKNSW FKRNSREKYG AVLCCSSQGF KRIKDVNHLR KETRTGCPAM  120
IRMRLVESQR WRVLEVMLEH NHMLGAKILR SVKKMGNGTK RKPLPSSDAE GQTIKLYRAL  180
VIDAGGNGNS NSCAREDITF SEFSNKWNLR KGDTQAIYNF LCRMQLTNPN FFYLMDFNDD  240
GHLRNAFWVD ARSRAACGYF GDVIYFDNTN LSNKFEIPLV TFVGINHHGQ SVLLGCGLLA  300
SETTESYLWL LRTWVKCMSG CSPQTIITDR CKALQSAIVE IFPRSHHCFG LSLIMKKVPE  360
KLGGLHNYDA IRKALIKAVY DTLKVIEFEA AWGFMIQCFG VSDHEWLRSL YEDRVRWAPV  420
YLKGTFFAGM SAARPGESIS PFFDRYVHKQ TPLKEFLDKY ELALHRKHKE ESFSDIESRS  480
SSPLLKTRCS FELQLSRMYT REMFMKFQLE VEEVYSCFGT TQLHVDGPII IFLVKERVLI  540
EGNRREIRDF EVLYSRTAGE VRCICSCFNF YGYLCRHALC VLNFNGVEEI PHKYILSRWK  600
KDFKRLYVPD HSSGGVNDTD RIQWSNQLFR SALQVVEEGI LSLDHYNVAL QSLEESLSKV  660
HDVEQRQE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G125400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025981560.10.0uncharacterized protein LOC100796448
RefseqXP_028204299.10.0uncharacterized protein LOC114388164
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A445GSQ80.0A0A445GSQ8_GLYSO; Protein FAR1-RELATED SEQUENCE 6
TrEMBLI1MFY30.0I1MFY3_SOYBN; Uncharacterized protein
STRINGGLYMA15G13150.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]