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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.15G116300.1.p |
| Common Name | GLYMA_15G116300, LOC100819190 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
GRAS |
| Protein Properties |
Length: 553aa MW: 61690.3 Da PI: 5.8372 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.15G116300.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 414.6 | 9.2e-127 | 179 | 550 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89
l+e+L++cA+av+++d e a ++++ l +++s gdp+qRl ay++e+L+arl +s+s +ykal++++ + s + +++++++++++P
Glyma.15G116300.1.p 179 LKEVLIRCAQAVADDDIETAVGFMNNvLAKMVSVGGDPIQRLGAYMLEGLRARLESSGSIIYKALKCEQPT---SNDLMTYMHILYQICP 265
5789********************872566799999**********************************9...89999999******** PP
GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
+ kf++ aN I ea+ +e+r+ iiDf+i qG+QW+ L+qaLasRp+gpp + +Tgv++++s+ + l+ +g+rL+++A+++gvpfe
Glyma.15G116300.1.p 266 YWKFAYTSANAVIGEAMLNESRIRIIDFQIAQGTQWLLLIQALASRPGGPPFVHVTGVDDSQSFhaRGGGLHIVGKRLSDYAKSCGVPFE 355
************************************************************9999889999******************** PP
GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
f+ +a +++ele+L ++pgEal+Vn+ + lh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F++rf+e+l+yy+a+
Glyma.15G116300.1.p 356 FHS-AAMCGSEVELENLVIQPGEALVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFAETLSYYTAM 444
***.899*********************************************************************************** PP
GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
f+s+++ lpr++++ri+ E+++++r+ivn+vaceg+er+erhe l+kWr+r+++aGF p pls+ +++ ++ +l++++++ yr+e ++g+
Glyma.15G116300.1.p 445 FESIDVALPRDDKQRINAEQHCVARDIVNMVACEGDERVERHELLGKWRSRFSMAGFAPCPLSSLVTDAVRNMLNEFNEN-YRLEYRDGA 533
******************************************************************************55.********* PP
GRAS 358 lvlgWkdrpLvsvSaWr 374
l+lgWk+r++ + SaWr
Glyma.15G116300.1.p 534 LYLGWKNRAMCTSSAWR 550
****************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 553 aa
Download sequence Send
to blast |
MQTSQKHPTS AGIHLYHQPA QDIDPYTHYQ ILQSNSCHEI HDNSSSQGTT ISFETSKDQY 60
FTLESSPVIN DLIGCDSPSY ASVSSNRSPF SPQASHSYHS DQHQSSDNTY GSPTSSHSTA 120
DDSYELKNKL RELEISLLGP DSDIVDSCHC SYKGGCHGAS PMAKYNWDQI VEMIPKLNLK 180
EVLIRCAQAV ADDDIETAVG FMNNVLAKMV SVGGDPIQRL GAYMLEGLRA RLESSGSIIY 240
KALKCEQPTS NDLMTYMHIL YQICPYWKFA YTSANAVIGE AMLNESRIRI IDFQIAQGTQ 300
WLLLIQALAS RPGGPPFVHV TGVDDSQSFH ARGGGLHIVG KRLSDYAKSC GVPFEFHSAA 360
MCGSEVELEN LVIQPGEALV VNFPFVLHHM PDESVSTENH RDRLLRLVKS LSPKVVTLVE 420
QESNTNTSPF FQRFAETLSY YTAMFESIDV ALPRDDKQRI NAEQHCVARD IVNMVACEGD 480
ERVERHELLG KWRSRFSMAG FAPCPLSSLV TDAVRNMLNE FNENYRLEYR DGALYLGWKN 540
RAMCTSSAWR CY*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
