PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G111900.2.p
Common NameGLYMA_15G111900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 306aa    MW: 34683.9 Da    PI: 6.5711
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G111900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-092312671955
                          HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  19 FeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                           +k +yps++++  LA+++gL+++q+ +WF N+R ++
  Glyma.15G111900.2.p 231 HYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 267
                          45679*****************************885 PP
2ELK41.43e-14187208122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK qLlrKYsgyLgsLkqEF+
  Glyma.15G111900.2.p 187 ELKGQLLRKYSGYLGSLKQEFM 208
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.4E-204791IPR005540KNOX1
PfamPF037901.6E-224887IPR005540KNOX1
SMARTSM012561.2E-26101152IPR005541KNOX2
PfamPF037912.4E-21104151IPR005541KNOX2
SMARTSM011882.8E-8187208IPR005539ELK domain
PROSITE profilePS5121311.174187207IPR005539ELK domain
PfamPF037894.8E-11187208IPR005539ELK domain
PROSITE profilePS5007113.086207270IPR001356Homeobox domain
SMARTSM003891.2E-12209274IPR001356Homeobox domain
SuperFamilySSF466891.2E-19209285IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-28212272IPR009057Homeodomain-like
CDDcd000866.29E-12219271No hitNo description
PfamPF059205.1E-17227266IPR008422Homeobox KN domain
PROSITE patternPS000270245268IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MLHNNNNTDD DNNKTSTNTG LGYYFMESDH HHRNNNNNGS SSSSSSSAVK AKIMAHPHYH  60
RLLAAYVNCQ KVGAPPEVVA RLEEACASAA TMAGDAAAAA GSSCIGEDPA LDQFMEAYCE  120
MLTKYEQELS KPLKEAMLFL QRIECQFKNL TISSTDFACN EGAERNGSSE EDVDLHNMID  180
PQAEDRELKG QLLRKYSGYL GSLKQEFMKK RKKGKLPKEA RQQLLEWWSR HYKWPYPSES  240
QKLALAESTG LDQKQINNWF INQRKRHWKP SEDMQFVVMD PSHPHYYMDN VLGNPFPMDL  300
SHPML*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202211LKQEFMKKRK
2208212KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.571380.0flower| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter.
UniprotTISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G111900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0973910.0BT097391.1 Soybean clone JCVI-FLGm-21P16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242710.20.0homeobox protein SBH1-like
RefseqXP_006597051.10.0uncharacterized protein LOC100805837 isoform X1
RefseqXP_028203179.10.0homeobox protein SBH1-like isoform X1
RefseqXP_028203180.10.0homeobox protein SBH1-like isoform X2
SwissprotP466080.0HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A0R0G9020.0A0A0R0G902_SOYBN; Uncharacterized protein
TrEMBLA0A445GS800.0A0A445GS80_GLYSO; Homeobox protein SBH1
TrEMBLI1MFK90.0I1MFK9_SOYBN; Uncharacterized protein
STRINGGLYMA15G11850.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-133KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]