PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G111900.1.p | ||||||||
Common Name | GLYMA_15G111900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TALE | ||||||||
Protein Properties | Length: 376aa MW: 41992.8 Da PI: 6.2272 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.6 | 2.5e-09 | 301 | 337 | 19 | 55 |
HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 19 FeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++++ LA+++gL+++q+ +WF N+R ++ Glyma.15G111900.1.p 301 HYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 337 45679*****************************885 PP | |||||||
2 | ELK | 41.1 | 3.8e-14 | 257 | 278 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ Glyma.15G111900.1.p 257 ELKGQLLRKYSGYLGSLKQEFM 278 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 5.4E-20 | 117 | 161 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.1E-22 | 118 | 157 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.2E-26 | 171 | 222 | IPR005541 | KNOX2 |
Pfam | PF03791 | 3.2E-21 | 174 | 221 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 11.174 | 257 | 277 | IPR005539 | ELK domain |
SMART | SM01188 | 2.8E-8 | 257 | 278 | IPR005539 | ELK domain |
Pfam | PF03789 | 6.3E-11 | 257 | 278 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.086 | 277 | 340 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-12 | 279 | 344 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.75E-19 | 279 | 355 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-28 | 282 | 342 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.25E-12 | 289 | 341 | No hit | No description |
Pfam | PF05920 | 6.8E-17 | 297 | 336 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 315 | 338 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MEGSSCSNDT SYLLAFGENS GGLCPMTMMP LVTSHHATNP SNPSNNTNNN ENTNCLFIPN 60 CSNSSGTPSI MLHNNNNTDD DNNKTSTNTG LGYYFMESDH HHRNNNNNGS SSSSSSSAVK 120 AKIMAHPHYH RLLAAYVNCQ KVGAPPEVVA RLEEACASAA TMAGDAAAAA GSSCIGEDPA 180 LDQFMEAYCE MLTKYEQELS KPLKEAMLFL QRIECQFKNL TISSTDFACN EGAERNGSSE 240 EDVDLHNMID PQAEDRELKG QLLRKYSGYL GSLKQEFMKK RKKGKLPKEA RQQLLEWWSR 300 HYKWPYPSES QKLALAESTG LDQKQINNWF INQRKRHWKP SEDMQFVVMD PSHPHYYMDN 360 VLGNPFPMDL SHPML* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 272 | 281 | LKQEFMKKRK |
2 | 278 | 282 | KKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.57138 | 0.0 | flower| somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G111900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097391 | 0.0 | BT097391.1 Soybean clone JCVI-FLGm-21P16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001242710.2 | 0.0 | homeobox protein SBH1-like | ||||
Refseq | XP_028203179.1 | 0.0 | homeobox protein SBH1-like isoform X1 | ||||
Swissprot | P46608 | 0.0 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | A0A445GS80 | 0.0 | A0A445GS80_GLYSO; Homeobox protein SBH1 | ||||
TrEMBL | I1MFK9 | 0.0 | I1MFK9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G11850.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2039 | 34 | 80 | Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-132 | KNOX/ELK homeobox transcription factor |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G111900.1.p |
Publications ? help Back to Top | |||
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