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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G092500.1.p | ||||||||
Common Name | GLYMA_15G092500, LOC100806032 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TCP | ||||||||
Protein Properties | Length: 512aa MW: 56027.5 Da PI: 7.1255 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119.9 | 3e-37 | 68 | 227 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssss 69 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a +ai el+++ ++++ Glyma.15G092500.1.p 68 SGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASEAISELPSLnnpfpdtpkqpsdekrptsgggQQQQ 157 689*************************************************************99998887554444433333321111 PP TCP 70 asec.eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134 ++ + +a+ + + ++n+s++ + +++a+s+ s++s+ s l+l++ r kar+rarer ++++ +++ Glyma.15G092500.1.p 158 QQGFdDADGDTNYQQNQSQNLSLSKSACSSTSETSKGSGLSLSRseirVNRVKARERARERAAKEKEKEK 227 1111222333333334445566666667777777777777777753335669********6555554443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.7E-43 | 69 | 225 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.415 | 70 | 128 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.946 | 205 | 223 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MEEDEIQACK FPRVGNGRSS DQYQEEEEEG DLRRKGVGGG GGSDASTNHF HQSSWHYSSR 60 IIRVSRASGG KDRHSKVMTS KGLRDRRVRL SVTTAIQFYD LQDRLGYDQP SKAVEWLIKA 120 ASEAISELPS LNNPFPDTPK QPSDEKRPTS GGGQQQQQQG FDDADGDTNY QQNQSQNLSL 180 SKSACSSTSE TSKGSGLSLS RSEIRVNRVK ARERARERAA KEKEKEKEKE SDFNIAHHHH 240 HHNVNNMSHT ASFTELLTGG IGSTVTVNPN TTTTTTTTAT SPNGSSVHQI HEGHDHEANL 300 FNKGSQQQQQ QQHHHWSQTV TPMDYFSAGL LVGPSSSAST QQHQSSGQFQ LGHGHAHAHA 360 LSISPFSGEN HSEQMQHFSF MPDHLNNMPS SAASASQHSE GDNNNYNLNF SISSSGLAGY 420 NRGTLQSNSP SSSFLPLLQR FQPLVDGSSN LPFFIGAAPP SSAPPTMDNN NSNNSNNHHH 480 LQFSPIFDGR LQLCYGDGTR QHSDHKGKGK N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-23 | 75 | 129 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-23 | 75 | 129 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.7830 | 0.0 | cotyledon| flower| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G092500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB076992 | 1e-174 | AB076992.1 Pueraria montana var. lobata PlCYC4 gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003547199.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_006597516.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_006597517.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_006597518.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_006597521.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_014623378.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_014623379.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_014623380.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_014623381.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_014623383.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_014623384.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_014623385.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_028202361.1 | 0.0 | transcription factor TCP2-like | ||||
Refseq | XP_028202362.1 | 0.0 | transcription factor TCP2-like | ||||
Refseq | XP_028202363.1 | 0.0 | transcription factor TCP2-like | ||||
Refseq | XP_028202364.1 | 0.0 | transcription factor TCP2-like | ||||
Refseq | XP_028202365.1 | 0.0 | transcription factor TCP2-like | ||||
Refseq | XP_028202366.1 | 0.0 | transcription factor TCP2-like | ||||
Refseq | XP_028202367.1 | 0.0 | transcription factor TCP2-like | ||||
TrEMBL | A0A0B2PH86 | 0.0 | A0A0B2PH86_GLYSO; Transcription factor TCP2 | ||||
TrEMBL | K7MAH5 | 0.0 | K7MAH5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G09910.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4019 | 31 | 56 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 1e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G092500.1.p |
Entrez Gene | 100806032 |