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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G091000.4.p | ||||||||
Common Name | GLYMA_15G091000, LOC100796447 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 898aa MW: 99618.8 Da PI: 6.7001 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.8 | 1.2e-24 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F Glyma.15G091000.4.p 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 214 99*****************************8544444..48************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++ +l+++++r+ Glyma.15G091000.4.p 215 --WNEKNQLLLGIRRA 228 ..8899999****997 PP | |||||||
2 | Auxin_resp | 120.4 | 1.4e-39 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k Glyma.15G091000.4.p 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 336 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.42E-49 | 112 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-43 | 119 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.84E-22 | 126 | 227 | No hit | No description |
SMART | SM01019 | 1.8E-25 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-23 | 127 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.14 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.8E-35 | 253 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.3E-6 | 762 | 849 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 9.81E-6 | 764 | 839 | No hit | No description |
PROSITE profile | PS51745 | 21.845 | 764 | 848 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 898 aa Download sequence Send to blast |
MRLSSADFSP PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE 60 VDAHIPNYPS LPPQLICQLH NMTMHADVET DEVYAQMTLQ PLNPQEQNEA YLPAELGTAS 120 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL 240 SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIG DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSSFP LRLKRPWPPG LPSFHGMKDD DFGLNSPLLW LRDTDRGLQS LNFQGIGVNP 420 WMQPRFDPTV LNMQTDMYQA AAAAAVQDMR SLDPSKQLSA SLLQFQQPQN FPNRTAALMQ 480 AQMLQKSQPQ QIFGNNQENQ HSPQSQPQTQ AHLQQHLQHQ HSFNSQHHHH QQQQQQQQVV 540 DNQQISSAVS TMSQLFSAPQ PQSPPMQAIS SLCQNFSNSN GNSVTTIVSP LHSILGSFPQ 600 DETSHLLNLP RTSSWIPIQN SSGWPSKRVA VDPLLSSGAS HCVLPQVDQL GQPHSTMSLN 660 AITLPPFPGR ESSIDQEGSN DPQNHLLFGV NIDPSSLLMP NGMSSLKGVS GNNNSSTLPY 720 QSSNYLNTTT GTDSSLNHGM TPNIGDSGFL HCPEDAGQGN PLNKTFVKVY KSGSFGRSLD 780 ITKFSSYHEL RGELARMFGL EGELEDPVRS GWQLVFVDRE NDVLLLGDGP WPEFVNSVWC 840 IKILSPQEVQ QMGNNGLELL NSVPNQRLSN GICDDYVSRQ DPRNLSTGIT TVGSLDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-161 | 13 | 357 | 43 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.26077 | 0.0 | flower| hypocotyl| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G091000.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003546066.1 | 0.0 | auxin response factor 6 isoform X2 | ||||
Refseq | XP_028203897.1 | 0.0 | auxin response factor 6-like isoform X2 | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A445GR18 | 0.0 | A0A445GR18_GLYSO; Auxin response factor | ||||
TrEMBL | K7MAG4 | 0.0 | K7MAG4_SOYBN; Auxin response factor | ||||
STRING | GLYMA15G09750.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G091000.4.p |
Entrez Gene | 100796447 |
Publications ? help Back to Top | |||
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