PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G091000.4.p
Common NameGLYMA_15G091000, LOC100796447
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 898aa    MW: 99618.8 Da    PI: 6.7001
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G091000.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.81.2e-24127228199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F 
  Glyma.15G091000.4.p 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 214
                          99*****************************8544444..48************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++ +l+++++r+
  Glyma.15G091000.4.p 215 --WNEKNQLLLGIRRA 228
                          ..8899999****997 PP
2Auxin_resp120.41.4e-39253336183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k
  Glyma.15G091000.4.p 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 336
                          79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.42E-49112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-43119242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-22126227No hitNo description
SMARTSM010191.8E-25127229IPR003340B3 DNA binding domain
PfamPF023623.5E-23127228IPR003340B3 DNA binding domain
PROSITE profilePS5086313.14127229IPR003340B3 DNA binding domain
PfamPF065079.8E-35253336IPR010525Auxin response factor
PfamPF023093.3E-6762849IPR033389AUX/IAA domain
SuperFamilySSF542779.81E-6764839No hitNo description
PROSITE profilePS5174521.845764848IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MRLSSADFSP PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE  60
VDAHIPNYPS LPPQLICQLH NMTMHADVET DEVYAQMTLQ PLNPQEQNEA YLPAELGTAS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIG DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSSFP LRLKRPWPPG LPSFHGMKDD DFGLNSPLLW LRDTDRGLQS LNFQGIGVNP  420
WMQPRFDPTV LNMQTDMYQA AAAAAVQDMR SLDPSKQLSA SLLQFQQPQN FPNRTAALMQ  480
AQMLQKSQPQ QIFGNNQENQ HSPQSQPQTQ AHLQQHLQHQ HSFNSQHHHH QQQQQQQQVV  540
DNQQISSAVS TMSQLFSAPQ PQSPPMQAIS SLCQNFSNSN GNSVTTIVSP LHSILGSFPQ  600
DETSHLLNLP RTSSWIPIQN SSGWPSKRVA VDPLLSSGAS HCVLPQVDQL GQPHSTMSLN  660
AITLPPFPGR ESSIDQEGSN DPQNHLLFGV NIDPSSLLMP NGMSSLKGVS GNNNSSTLPY  720
QSSNYLNTTT GTDSSLNHGM TPNIGDSGFL HCPEDAGQGN PLNKTFVKVY KSGSFGRSLD  780
ITKFSSYHEL RGELARMFGL EGELEDPVRS GWQLVFVDRE NDVLLLGDGP WPEFVNSVWC  840
IKILSPQEVQ QMGNNGLELL NSVPNQRLSN GICDDYVSRQ DPRNLSTGIT TVGSLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1611335743388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.260770.0flower| hypocotyl| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G091000.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546066.10.0auxin response factor 6 isoform X2
RefseqXP_028203897.10.0auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A445GR180.0A0A445GR18_GLYSO; Auxin response factor
TrEMBLK7MAG40.0K7MAG4_SOYBN; Auxin response factor
STRINGGLYMA15G09750.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]