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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G091000.3.p | ||||||||
Common Name | GLYMA_15G091000, LOC100796447 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 818aa MW: 90862.9 Da PI: 6.7987 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78 | 1e-24 | 46 | 147 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F Glyma.15G091000.3.p 46 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 133 99*****************************8544444..48************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++ +l+++++r+ Glyma.15G091000.3.p 134 --WNEKNQLLLGIRRA 147 ..8899999****997 PP | |||||||
2 | Auxin_resp | 120.5 | 1.3e-39 | 172 | 255 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k Glyma.15G091000.3.p 172 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 255 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.24E-49 | 31 | 175 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-43 | 38 | 161 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.53E-22 | 45 | 146 | No hit | No description |
Pfam | PF02362 | 3.1E-23 | 46 | 147 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-25 | 46 | 148 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.14 | 46 | 148 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.7E-35 | 172 | 255 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.9E-6 | 682 | 769 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 8.5E-6 | 684 | 759 | No hit | No description |
PROSITE profile | PS51745 | 21.845 | 684 | 768 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 818 aa Download sequence Send to blast |
MTMHADVETD EVYAQMTLQP LNPQEQNEAY LPAELGTASK QPTNYFCKTL TASDTSTHGG 60 FSVPRRAAEK VFPPLDFSQQ PPAQELIARD LHGNEWKFRH IFRGQPKRHL LTTGWSVFVS 120 AKRLVAGDSV LFIWNEKNQL LLGIRRANRP QTVMPSSVLS SDSMHLGLLA AAAHAAATNS 180 RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR VSVGMRFRML FETEESSVRR YMGTITGIGD 240 LDPVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSSFPL RLKRPWPPGL 300 PSFHAGMKDD DFGLNSPLLW LRDTDRGLQS LNFQGIGVNP WMQPRFDPTV LNMQTDMYQA 360 AAAAAVQDMR SLDPSKQLSA SLLQFQQPQN FPNRTAALMQ AQMLQKSQPQ QIFGNNQENQ 420 HSPQSQPQTQ AHLQQHLQHQ HSFNSQHHHH QQQQQQQQVV DNQQISSAVS TMSQLFSAPQ 480 PQSPPMQAIS SLCQNFSNSN GNSVTTIVSP LHSILGSFPQ DETSHLLNLP RTSSWIPIQN 540 SSGWPSKRVA VDPLLSSGAS HCVLPQVDQL GQPHSTMSLN AITLPPFPGR ESSIDQEGSN 600 DPQNHLLFGV NIDPSSLLMP NGMSSLKGVS GNNNSSTLPY QSSNYLNTTT GTDSSLNHGM 660 TPNIGDSGFL HCPEDAGQGN PLNKTFVKVY KSGSFGRSLD ITKFSSYHEL RGELARMFGL 720 EGELEDPVRS GWQLVFVDRE NDVLLLGDGP WPEFVNSVWC IKILSPQEVQ QMGNNGLELL 780 NSVPNQRLSN GICDDYVSRQ DPRNLSTGIT TVGSLDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-124 | 1 | 276 | 113 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.26077 | 0.0 | flower| hypocotyl| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G091000.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006597509.1 | 0.0 | auxin response factor 6 isoform X1 | ||||
Refseq | XP_006597510.1 | 0.0 | auxin response factor 6 isoform X3 | ||||
Refseq | XP_028203896.1 | 0.0 | auxin response factor 6-like isoform X1 | ||||
Refseq | XP_028203898.1 | 0.0 | auxin response factor 6-like isoform X3 | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A0R0FYA1 | 0.0 | A0A0R0FYA1_SOYBN; Auxin response factor | ||||
TrEMBL | A0A445GRA2 | 0.0 | A0A445GRA2_GLYSO; Auxin response factor | ||||
TrEMBL | K7MAG3 | 0.0 | K7MAG3_SOYBN; Auxin response factor | ||||
STRING | GLYMA15G09750.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G091000.3.p |
Entrez Gene | 100796447 |
Publications ? help Back to Top | |||
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