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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G091000.2.p | ||||||||
Common Name | GLYMA_15G091000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 817aa MW: 90791.8 Da PI: 6.7987 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78 | 1e-24 | 46 | 147 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F Glyma.15G091000.2.p 46 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 133 99*****************************8544444..48************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++ +l+++++r+ Glyma.15G091000.2.p 134 --WNEKNQLLLGIRRA 147 ..8899999****997 PP | |||||||
2 | Auxin_resp | 120.5 | 1.3e-39 | 172 | 255 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k Glyma.15G091000.2.p 172 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 255 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.11E-49 | 31 | 175 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-43 | 38 | 161 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.53E-22 | 45 | 146 | No hit | No description |
Pfam | PF02362 | 3.1E-23 | 46 | 147 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-25 | 46 | 148 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.14 | 46 | 148 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.7E-35 | 172 | 255 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.9E-6 | 681 | 768 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 8.5E-6 | 683 | 758 | No hit | No description |
PROSITE profile | PS51745 | 21.845 | 683 | 767 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 817 aa Download sequence Send to blast |
MTMHADVETD EVYAQMTLQP LNPQEQNEAY LPAELGTASK QPTNYFCKTL TASDTSTHGG 60 FSVPRRAAEK VFPPLDFSQQ PPAQELIARD LHGNEWKFRH IFRGQPKRHL LTTGWSVFVS 120 AKRLVAGDSV LFIWNEKNQL LLGIRRANRP QTVMPSSVLS SDSMHLGLLA AAAHAAATNS 180 RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR VSVGMRFRML FETEESSVRR YMGTITGIGD 240 LDPVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSSFPL RLKRPWPPGL 300 PSFHGMKDDD FGLNSPLLWL RDTDRGLQSL NFQGIGVNPW MQPRFDPTVL NMQTDMYQAA 360 AAAAVQDMRS LDPSKQLSAS LLQFQQPQNF PNRTAALMQA QMLQKSQPQQ IFGNNQENQH 420 SPQSQPQTQA HLQQHLQHQH SFNSQHHHHQ QQQQQQQVVD NQQISSAVST MSQLFSAPQP 480 QSPPMQAISS LCQNFSNSNG NSVTTIVSPL HSILGSFPQD ETSHLLNLPR TSSWIPIQNS 540 SGWPSKRVAV DPLLSSGASH CVLPQVDQLG QPHSTMSLNA ITLPPFPGRE SSIDQEGSND 600 PQNHLLFGVN IDPSSLLMPN GMSSLKGVSG NNNSSTLPYQ SSNYLNTTTG TDSSLNHGMT 660 PNIGDSGFLH CPEDAGQGNP LNKTFVKVYK SGSFGRSLDI TKFSSYHELR GELARMFGLE 720 GELEDPVRSG WQLVFVDREN DVLLLGDGPW PEFVNSVWCI KILSPQEVQQ MGNNGLELLN 780 SVPNQRLSNG ICDDYVSRQD PRNLSTGITT VGSLDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-124 | 1 | 276 | 113 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.26077 | 0.0 | flower| hypocotyl| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G091000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003546066.1 | 0.0 | auxin response factor 6 isoform X2 | ||||
Refseq | XP_028203897.1 | 0.0 | auxin response factor 6-like isoform X2 | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A445GR96 | 0.0 | A0A445GR96_GLYSO; Auxin response factor | ||||
STRING | GLYMA15G09750.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G091000.2.p |
Publications ? help Back to Top | |||
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