PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G086400.2.p
Common NameGLYMA_15G086400, LOC100784280
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 393aa    MW: 44878.9 Da    PI: 4.8499
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G086400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.95.1e-36151062102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+ye+++d+++++++sws++++sf+v+++ ef++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ 
  Glyma.15G086400.2.p  15 FLTKTYEMVDDPSTNSIVSWSATNRSFIVWNPPEFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANDDFVRGQP 95 
                          9********************999****************************************9998.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k 
  Glyma.15G086400.2.p  96 HLLKNIHRRKP 106
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-39499IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-3610104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.7E-6411104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-201538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3215104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-205365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MMEEAQGNSS SLPPFLTKTY EMVDDPSTNS IVSWSATNRS FIVWNPPEFS RDLLPKYFKH  60
NNFSSFIRQL NTYGFRKIDP EQWEFANDDF VRGQPHLLKN IHRRKPVHSH SLQNIQGQGS  120
SLLTESERRS FKDEIEKLKH EKERLLRELE RHEQEWKMYE VQLQHSNDCL EKLEKKQESL  180
VSSVSQVLQK PGIALNLLLL TENMDRKRRL PRSGLFSDDA GIEDHMETSP VLPRENADGS  240
SIFSSSTERL DLLESSMTFW EDITHDVGDI FVQSHLNLDF DASTSCADSP AISCVQLEVE  300
DQPKSPGINM NSEPSVVAVP DLDASKEQPV GKAPVTTGVN DIFWERFLTE NPGSSEMQEA  360
QSERKDSDGR SNAKFWWNIR NVNNPPEQMG HS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-251010424129Heat shock factor protein 1
5d5v_B2e-251010424129Heat shock factor protein 1
5d5v_D2e-251010424129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209DRKRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.610720.0flower| hypocotyl| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G086400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340393.10.0heat stress transcription factor 31
RefseqXP_028204439.10.0heat stress transcription factor A-4a-like
SwissprotO494031e-124HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A0B2R9K90.0A0A0B2R9K9_GLYSO; Heat stress transcription factor A-4a
TrEMBLI1MEV90.0I1MEV9_SOYBN; Uncharacterized protein
STRINGGLYMA15G09280.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-107heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]