PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G085400.1.p
Common NameGLYMA_15G085400, LOC102661478
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 363aa    MW: 39132.8 Da    PI: 8.0574
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G085400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-182777256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                         ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a+++a+++l+g+
  Glyma.15G085400.1.p 27 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDNAARALRGA 77
                         689******.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.44E-312784No hitNo description
SMARTSM003803.4E-362790IPR001471AP2/ERF domain
PROSITE profilePS5103220.4952784IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-292784IPR001471AP2/ERF domain
PfamPF008471.9E-122776IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-202884IPR016177DNA-binding domain
PRINTSPR003671.2E-72839IPR001471AP2/ERF domain
PRINTSPR003671.2E-75066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSKKQNMGAV SDGNRSRKKS SSRGHHRFVG VRQRPSGRWV AEIKDSLQKV RLWLGTFDTA  60
EDAARAYDNA ARALRGANAR TNFELPESSS GGATKRGGSK FVPDCTEPFS FEDVNEPGSE  120
AEGLLGALKA KLLDGKKGKF QFQFLGNCSA PVVQSGMVSR STQNCSGKKE LLLPSSANNT  180
VLSRMNGTGT CSPVHGLMST LASSNTCAKT VVIPNHDHEL VAVASTSSGR VYSHQLCQTP  240
PVTTWPNEVA YDLPWPTQYM SQVPDNSLLA SSGAVATLST WPLSGVTEST VDMTYMDQGQ  300
SNSNKSGQMM NMVSMQLPLV GGANEGLWTL EQQQFVQCDQ NNSWFSFNGS WDPLLYVPSE  360
LT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1425831271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G085400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597486.10.0uncharacterized protein LOC102661478
RefseqXP_028203660.10.0uncharacterized protein LOC114387651
TrEMBLA0A445GR290.0A0A445GR29_GLYSO; Ethylene-responsive transcription factor ERN1
TrEMBLI1MEV20.0I1MEV2_SOYBN; Uncharacterized protein
STRINGGLYMA15G09190.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-13related to AP2 11