PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G079200.1.p
Common NameGLYMA_15G079200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 267aa    MW: 29626.2 Da    PI: 5.675
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G079200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19124174255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrd s+   + +r++lg+f+taeeAa  +++a+++++g
  Glyma.15G079200.1.p 124 HYRGVRRRP-WGKYAAEIRDSSK---KgARVWLGTFDTAEEAALSYDKAALRIRG 174
                          8********.**********543...34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.47E-30123182No hitNo description
Gene3DG3DSA:3.30.730.103.7E-31123183IPR001471AP2/ERF domain
SMARTSM003802.9E-37124188IPR001471AP2/ERF domain
PROSITE profilePS5103223.762124182IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-23124184IPR016177DNA-binding domain
PfamPF008473.6E-14124174IPR001471AP2/ERF domain
PRINTSPR003677.8E-11125136IPR001471AP2/ERF domain
PRINTSPR003677.8E-11148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDIHSNHGAT SEGILENVWA KIMSSDRADG RKGDAAECSN SWEELPNLDG REGSMEILQR  60
LPSLGRWISM GADFWEEVLE GIILPNTSNT EYSGSNNNLE IGSANETHNK VGDAVRIEKS  120
VTKHYRGVRR RPWGKYAAEI RDSSKKGARV WLGTFDTAEE AALSYDKAAL RIRGPKAYLN  180
FPLEMVANAL ACDHKAVTHL ACTCIGNKEK LINSRKRASR EREAFDDIMN EQPATKKLEC  240
MVENELGAFV FHDLGSDYLD SLLSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-29123185163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-29123185466ATERF1
3gcc_A7e-29123185466ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G079200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025981540.10.0ethylene-responsive transcription factor ERF091-like
TrEMBLI1MEP00.0I1MEP0_SOYBN; Uncharacterized protein
STRINGGLYMA15G08580.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.11e-41ERF family protein