PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G078300.2.p
Common NameGLYMA_15G078300, Glyma15g08480.4, LOC100809389
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 323aa    MW: 36190.7 Da    PI: 7.0242
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G078300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.82.7e-33612031128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 
                          lp+G++F+P+d+e++ e+L++kv+++ ++l+        +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++   
  Glyma.15G078300.2.p  61 LPAGVKFDPNDQEIL-EHLEAKVASDACKLHPlidefipTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtdd 148
                          799***********9.99********95553333333222333336**********.555666777******************744456 PP

                  NAM  80 ...sgyWkatgkdkevlsk.kgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                             + +W++tgk+++v+++ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Glyma.15G078300.2.p 149 egsETRWHKTGKTRAVFAAaGGAVKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 203
                          555788***********9978889**********6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-3655222IPR003441NAC domain
PROSITE profilePS5100534.12661222IPR003441NAC domain
PfamPF023655.6E-1562203IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MTWCNDSDED RVIESTTPTI TITPNTDGIK LTEEIRTITC PSCGHNIEFK DQGGIHDLPG  60
LPAGVKFDPN DQEILEHLEA KVASDACKLH PLIDEFIPTL EGENGICYTH PEKLPGVSKD  120
GQIRHFFHRP SKAYTTGTRK RRKVHTDDEG SETRWHKTGK TRAVFAAAGG AVKGFKKILV  180
LYTNYGRQKK PEKTNWVMHQ YHLGSTEEEK DGELVVSKVF YQTQPRQCGN PIIIKDSYEK  240
MLNDGSGQDN INISLIPKTT ATLLDCYTAP YIDYDHVHVS HNRESSSQLI IPSSVVQVDG  300
SYIRLTMDAK KARFESNTGK RF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.184460.0flower| hypocotyl| meristem| root| somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G078300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312200.0KT031220.1 Glycine max clone HN_CCL_58 NAC transcription factor (Glyma15g08480.4) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546008.10.0NAC domain-containing protein 73
RefseqXP_028205153.10.0NAC domain-containing protein 73-like
SwissprotO494591e-120NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0B2QGN40.0A0A0B2QGN4_GLYSO; NAC domain-containing protein 73 isoform A
TrEMBLI1MEN30.0I1MEN3_SOYBN; NAC transcription factor
STRINGGLYMA15G08480.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-112NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]
  4. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]