PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.15G075800.1.p

Common Name

GLYMA_15G075800, LOC100817065

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 314aa MW: 33801.3 Da PI: 9.6657

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.15G075800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.7	1.3e-38	35	95	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ +kcprCds ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+++ Glyma.15G075800.1.p 35 PQQPQKCPRCDSLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRAK 95 67899***************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	5.3E-33	37	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.835	39	93	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-24	40	93	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MEQGVEEGGG MNKIPRDSRV KEIRQGDAQI QVQAPQQPQK CPRCDSLNTK FCYYNNYSLS 60 QPRYFCKTCR RYWTQGGTLR NVPVGGGCRK GKRAKSSNSS SSENMNSSSR SLPQQQQQPQ 120 GVVVQTQAPP LTTVVKAKDP SSVVASTFYQ SGGYLSSLAA MHSLNSSSHP FDHSLNFAGS 180 DTLRSSNLGL LSGFNVQRPI GPIRPPHLYH QMGSGEREMV SLYEQGLVNP SSSSMANTDT 240 NSSGVSQHDW PMSFINNNNN NASNRASDAS LWSTISTTVG GNAERTSPSG VGAGSSSFVK 300 NQWPNLPGYG PPP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.15G075800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235268	0.0	AC235268.1 Glycine max strain Williams 82 clone GM_WBb0044I02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006597450.1	0.0	dof zinc finger protein DOF1.6
Refseq	XP_028202866.1	0.0	dof zinc finger protein DOF1.6-like
TrEMBL	A0A445GQN9	0.0	A0A445GQN9_GLYSO; Dof zinc finger protein DOF5.3
TrEMBL	I1MEK7	0.0	I1MEK7_SOYBN; Uncharacterized protein
STRING	GLYMA15G08230.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	2e-32	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Glyma.15G075800.1.p
Entrez Gene	100817065