PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G063900.1.p
Common NameGLYMA_15G063900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 197aa    MW: 23212.7 Da    PI: 6.0996
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G063900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.000164585455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         ++ e ErrRR+++ s++  Lr+++            Ka+i+e A+ YI +Lq
  Glyma.15G063900.1.p 45 KNLETERRRREKLSSRLLMLRSMMN-----------KATIVEDAITYIEKLQ 85
                         56689*****************975...........559***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1138100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-74089No hitNo description
Gene3DG3DSA:4.10.280.106.0E-940101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-54790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MEYEDEDWLC VTMDEFSLAT ENGFSRQMMS RKRNYDDDTR EYKSKNLETE RRRREKLSSR  60
LLMLRSMMNK ATIVEDAITY IEKLQDKVQN LSQELHQMEA TSVETAETKI VEIDAVEDMK  120
NWGIQEEVRV AQINENKLWV KIIIEKKRGR FNRLMQALNN FGIELIDTNL TTTKGSFLIT  180
SCIKVILRKI KIKLDF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14954ERRRRE
25055RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G063900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-47AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020233986.11e-111transcription factor DYT1
TrEMBLA0A0R0G5W51e-139A0A0R0G5W5_SOYBN; Uncharacterized protein
STRINGGLYMA15G06950.21e-115(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Representative plantOGRP1030948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.13e-26bHLH family protein