PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G061400.2.p
Common NameGLYMA_15G061400, LOC100790824, SAT1
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 348aa    MW: 39156.7 Da    PI: 8.5957
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G061400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12171218355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L +A++Y+k++q
  Glyma.15G061400.2.p 171 QDHIIAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGEAIKYLKQMQ 218
                          5799************************.....9*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.018168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-16172233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10172218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-17172230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.21E-12173222No hitNo description
SMARTSM003534.1E-14174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MRSSHMEISS IRGLPELGII EDPNFLHQWQ LNSIDTTSLK GAAFGDILQK HSFSDNSNFN  60
PKTSMETSQT GIERYAKQLG DNSWNHNKSQ QQTPETQFAS CSNLLSFVNT NYTSELGLVK  120
PKVEMACPKI DNNALADMLI SQGTLGNQNY IFKASQETKK IKTRPKLSQP QDHIIAERKR  180
REKLSQRFIA LSALVPGLKK MDKASVLGEA IKYLKQMQEK VSALEEEQNR KRTVESVVIV  240
KKSQLSSDAE DSSSETGGTF VEALPEIEAR FWERNVLIRI HCEKNKGVIE KTISEIEKLH  300
LKVINSSALT FGSFILDITI IAQMDMEFCM TVKDLVRSLR SAFSYFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14169228564Transcription factor MYC2
5gnj_B1e-14169228564Transcription factor MYC2
5gnj_E1e-14169228564Transcription factor MYC2
5gnj_F1e-14169228564Transcription factor MYC2
5gnj_G1e-14169228564Transcription factor MYC2
5gnj_I1e-14169228564Transcription factor MYC2
5gnj_M1e-14169228564Transcription factor MYC2
5gnj_N1e-14169228564Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181ERKRRE
2177182RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.1510.0seed coat
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO33997760.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Function -- GeneRIF ? help Back to Top
  1. GmbHLHm1 influences nodule development and activity and is linked to a novel mechanism for NH4(+) transport common to both yeast and plants.
    [PMID: 24707045]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G061400.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0697380.0AF069738.1 Glycine max symbiotic ammonium transporter (SAT1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001239843.10.0transcription factor bHLH25-like
SwissprotQ9T0722e-60BH025_ARATH; Transcription factor bHLH25
TrEMBLO813480.0O81348_SOYBN; Symbiotic ammonium transporter
STRINGGLYMA15G06680.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-60bHLH family protein
Publications ? help Back to Top
  1. Chiasson DM, et al.
    Soybean SAT1 (Symbiotic Ammonium Transporter 1) encodes a bHLH transcription factor involved in nodule growth and NH4+ transport.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(13): p. 4814-9
    [PMID:24707045]
  2. Kaiser BN, et al.
    Characterization of an ammonium transport protein from the peribacteroid membrane of soybean nodules.
    Science, 1998. 281(5380): p. 1202-6
    [PMID:9712587]