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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.15G059600.1.p |
Common Name | GLYMA_15G059600, LOC100808145 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
MIKC_MADS |
Protein Properties |
Length: 250aa MW: 28846 Da PI: 9.4761 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.15G059600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 86.6 | 1.5e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
ri+n++ rqvtfskRrng+lKKA ELS+LCdaev +++fsstgkly+y+s
Glyma.15G059600.1.p 10 RIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYAS 59
8***********************************************86 PP
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2 | K-box | 86.5 | 5.4e-29 | 81 | 171 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
+ +++a+ +q+e+a L+++++ Lq+ +R+l+Ge+L L +keLq+Le+qLe slk +R kK+++l+++ieel++k + +++en +L +k+
Glyma.15G059600.1.p 81 NPASEAKFWQTEAASLRQQLQYLQECHRQLMGEELMGLGIKELQSLENQLEMSLKGVRMKKDQILTNEIEELRQKGNLIHQENVELYQKM 170
457889**********************************************************************************98 PP
K-box 99 e 99
e
Glyma.15G059600.1.p 171 E 171
7 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 32.085 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.83E-46 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 7.59E-33 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.7E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.9E-27 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.935 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 250 aa
Download sequence Send
to blast |
MGRGKIAIRR IDNSTSRQVT FSKRRNGLLK KARELSILCD AEVGLMVFSS TGKLYDYAST 60 SMKSVIERYN KLKEEHHHLM NPASEAKFWQ TEAASLRQQL QYLQECHRQL MGEELMGLGI 120 KELQSLENQL EMSLKGVRMK KDQILTNEIE ELRQKGNLIH QENVELYQKM EQIQKENAEL 180 QKKVYEARST NEENVASNPS YKVRNGYDLH APISLQLSQP QPQYSEPSAK AIKLGYPLKL 240 IYQVYNFSF*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |