PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.15G051200.3.p | ||||||||
Common Name | GLYMA_15G051200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 162aa MW: 18553.9 Da PI: 8.8992 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 119.3 | 3.5e-37 | 8 | 128 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF Ptdeelvv++L++k++ +++ +vi+++++y ++Pw+L+ ++ ae ++wy++s+r +nr+t +gyWk tg ++ Glyma.15G051200.3.p 8 LPPGFRFYPTDEELVVHFLHRKASLLPCHP-DVIPDLEVYPYDPWELDGRALAEGNQWYYYSRRT--------QNRVTGNGYWKPTGIEE 88 79*************************999.99**************977778899******984........58*************** PP NAM 91 evlsk.kgelvglkktLvfykgrap.kgektdWvmheyrl 128 +v+s+ +++ vg+kk +vf+ g+ap g kt+W+m+eyrl Glyma.15G051200.3.p 89 PVVSStSNKRVGMKKYFVFHVGEAPaAGIKTNWIMQEYRL 128 ***9867778**********998772588*********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-46 | 5 | 134 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.318 | 8 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-23 | 9 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 162 aa Download sequence Send to blast |
MGDNNVNLPP GFRFYPTDEE LVVHFLHRKA SLLPCHPDVI PDLEVYPYDP WELDGRALAE 60 GNQWYYYSRR TQNRVTGNGY WKPTGIEEPV VSSTSNKRVG MKKYFVFHVG EAPAAGIKTN 120 WIMQEYRLSD SSSSTRSSKR KSQPKIVSIH IFIHNQEAHQ T* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-38 | 4 | 139 | 13 | 153 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-38 | 4 | 139 | 13 | 153 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-38 | 4 | 139 | 13 | 153 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-38 | 4 | 139 | 13 | 153 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-38 | 4 | 139 | 16 | 156 | NAC domain-containing protein 19 |
3swm_B | 2e-38 | 4 | 139 | 16 | 156 | NAC domain-containing protein 19 |
3swm_C | 2e-38 | 4 | 139 | 16 | 156 | NAC domain-containing protein 19 |
3swm_D | 2e-38 | 4 | 139 | 16 | 156 | NAC domain-containing protein 19 |
3swp_A | 2e-38 | 4 | 139 | 16 | 156 | NAC domain-containing protein 19 |
3swp_B | 2e-38 | 4 | 139 | 16 | 156 | NAC domain-containing protein 19 |
3swp_C | 2e-38 | 4 | 139 | 16 | 156 | NAC domain-containing protein 19 |
3swp_D | 2e-38 | 4 | 139 | 16 | 156 | NAC domain-containing protein 19 |
4dul_A | 1e-38 | 4 | 139 | 13 | 153 | NAC domain-containing protein 19 |
4dul_B | 1e-38 | 4 | 139 | 13 | 153 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.38840 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.15G051200.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU661918 | 0.0 | EU661918.1 Glycine max NAC domain protein (NAC18) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025981671.1 | 1e-120 | NAC domain-containing protein 104 isoform X2 | ||||
Swissprot | Q8GWK6 | 6e-62 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A445GPC0 | 1e-118 | A0A445GPC0_GLYSO; NAC domain-containing protein 104 isoform B | ||||
TrEMBL | I1MDU7 | 1e-118 | I1MDU7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G05690.1 | 1e-106 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64530.1 | 3e-63 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.15G051200.3.p |
Publications ? help Back to Top | |||
---|---|---|---|
|