PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 192aa MW: 22066.6 Da PI: 4.9335

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.15G051200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	118.6	6e-37	8	128	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF Ptdeelvv++L++k++ +++ +vi+++++y ++Pw+L+ ++ ae ++wy++s+r +nr+t +gyWk tg ++ Glyma.15G051200.1.p 8 LPPGFRFYPTDEELVVHFLHRKASLLPCHP-DVIPDLEVYPYDPWELDGRALAEGNQWYYYSRRT--------QNRVTGNGYWKPTGIEE 88 79***********************999.99**********977778899**984........58*********** PP NAM 91 evlsk.kgelvglkktLvfykgrap.kgektdWvmheyrl 128 +v+s+ +++ vg+kk +vf+ g+ap g kt+W+m+eyrl Glyma.15G051200.1.p 89 PVVSStSNKRVGMKKYFVFHVGEAPaAGIKTNWIMQEYRL 128 9867778*******998772588*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-48	5	158	IPR003441	NAC domain
PROSITE profile	PS51005	46.459	8	159	IPR003441	NAC domain
Pfam	PF02365	6.8E-23	9	128	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MGDNNVNLPP GFRFYPTDEE LVVHFLHRKA SLLPCHPDVI PDLEVYPYDP WELDGRALAE 60 GNQWYYYSRR TQNRVTGNGY WKPTGIEEPV VSSTSNKRVG MKKYFVFHVG EAPAAGIKTN 120 WIMQEYRLSD SSSSTRSSKR KSQPKIEYNK WVICRVYERN GDDDNGTELS CLDEVFLSLD 180 DDLDEISLPN Y*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-41	4	160	13	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-41	4	160	13	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-41	4	160	13	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-41	4	160	13	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-41	4	160	16	169	NAC domain-containing protein 19
3swm_B	2e-41	4	160	16	169	NAC domain-containing protein 19
3swm_C	2e-41	4	160	16	169	NAC domain-containing protein 19
3swm_D	2e-41	4	160	16	169	NAC domain-containing protein 19
3swp_A	2e-41	4	160	16	169	NAC domain-containing protein 19
3swp_B	2e-41	4	160	16	169	NAC domain-containing protein 19
3swp_C	2e-41	4	160	16	169	NAC domain-containing protein 19
3swp_D	2e-41	4	160	16	169	NAC domain-containing protein 19
4dul_A	2e-41	4	160	13	166	NAC domain-containing protein 19
4dul_B	2e-41	4	160	13	166	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.38840	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269\|PubMed:15923329, ECO:0000269\|PubMed:18069942}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.15G051200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU661918	0.0	EU661918.1 Glycine max NAC domain protein (NAC18) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003547591.1	1e-142	NAC domain-containing protein 104 isoform X1
Refseq	XP_028202207.1	1e-142	NAC domain-containing protein 104-like
Swissprot	Q8GWK6	2e-82	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A445GPE4	1e-141	A0A445GPE4_GLYSO; NAC domain-containing protein 104 isoform A
TrEMBL	I1MDU6	1e-141	I1MDU6_SOYBN; Uncharacterized protein
STRING	GLYMA15G05690.1	1e-141	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95
Representative plant	OGRP4510	10	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	7e-76	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	Glyma.15G051200.1.p
Entrez Gene	100170712

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]