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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G045200.1.p | ||||||||
Common Name | GLYMA_15G045200, LOC100798401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 173aa MW: 19195.8 Da PI: 5.7466 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.1 | 2.7e-42 | 3 | 102 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf +h++FGasn++k+l++lpe++r da++s+vyeA ar+rdPvyG++g i +lq+q+++l Glyma.15G045200.1.p 3 PCAACKILRRRCAEKCVLAPYFPLTEPSKFTTAHRVFGASNIIKFLQELPESQRADAVASMVYEAGARIRDPVYGCAGAICQLQKQVNEL 92 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +a+la++++e Glyma.15G045200.1.p 93 QAQLAKAQAE 102 ******9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.954 | 2 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.2E-42 | 3 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MSPCAACKIL RRRCAEKCVL APYFPLTEPS KFTTAHRVFG ASNIIKFLQE LPESQRADAV 60 ASMVYEAGAR IRDPVYGCAG AICQLQKQVN ELQAQLAKAQ AEVVNMQLQQ ANLVALICME 120 MAQTQTPQEY SPQQSVDNFI SSTSHSSGYQ NNLNFFEENT NNLNSLWEPL WT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-41 | 2 | 105 | 10 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-41 | 2 | 105 | 10 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.36559 | 1e-119 | cotyledon| meristem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G045200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097175 | 1e-117 | BT097175.1 Soybean clone JCVI-FLGm-21N19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006597316.1 | 1e-126 | LOB domain-containing protein 11 | ||||
Refseq | XP_028203689.1 | 1e-126 | LOB domain-containing protein 11-like | ||||
Swissprot | Q9SK08 | 1e-73 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A445GNZ4 | 1e-125 | A0A445GNZ4_GLYSO; LOB domain-containing protein 11 | ||||
TrEMBL | I1MDM7 | 1e-125 | I1MDM7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G05030.1 | 1e-125 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 7e-67 | LOB domain-containing protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G045200.1.p |
Entrez Gene | 100798401 |