PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G037300.2.p
Common NameGLYMA_15G037300, LOC100780881
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 717aa    MW: 79307.2 Da    PI: 8.2978
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G037300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.8e-08616665147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Glyma.15G037300.2.p 616 RRPFSVAEVEALVQAVEKLGTGRWRDVKLHAFdnaKHRTYVDLKDKWKTL 665
                          6789999***********************999**************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542368.8E-8416507IPR029071Ubiquitin-related domain
PROSITE profilePS500538.502421491IPR000626Ubiquitin domain
PROSITE profilePS5129416.741611670IPR017930Myb domain
SMARTSM007177.2E-8615668IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-10616666IPR009057Homeodomain-like
CDDcd116601.52E-17617667No hitNo description
SuperFamilySSF466897.01E-16617698IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MVLQKRLDYS FYGYHVPTKR RATRSAKRRA TFQRRLEDNQ MCAFDLLATI ADNLLQEKQN  60
PTISSDRSSE KDRDGFSKVE CQDANKPFKT ELSDEASCDR KCQHEFVREG CPDANKPFKA  120
ELSDEGSSDR KCFSNISSQL YNQNCCLKEL LQHEIDGHSC IASIVTSSSC SEKIVAERLV  180
DGKGHNGVEN LASKVELGSS GCLESSGCKL DGDVSKVKDG KVGKVPIDTG TGMCCFEDPL  240
DEKPPALISS CGNAKMSGYD DSKPQSSLSK GCDNVLVDSR DDDENFSGYA HPSTKINSFK  300
QITCIDDRKI KKTLDSKYHK VSQESKHDIL SNSVLDGNLK SVYSSRKNYY KSQRSQMCIP  360
FKKRKLFNCS SSDTNSNGYI RSDDTCYSPK NDTNQSVSCS SSDHGTSSLG HSALRSRDSH  420
VKLRIKSFRV PELFIEIPET ATVGSLKRTV MEAVTAVLGG GLRVGVILHG KKVRDDSKTL  480
LQTGISHDNH LDALGFALEP NCSQNRSSAC ATTDSLCVPG ADMHQPLIGY PSSRAAIHQR  540
IQGFSNMLAE HQATGLGNLV ESDHDSAPSP INTSGEKNLT DSKELITVPE MGMEALAVLP  600
VHQKSKRTEI APRRIRRPFS VAEVEALVQA VEKLGTGRWR DVKLHAFDNA KHRTYVDLKD  660
KWKTLVHTAR ISPQQRRGEP VPQELLDRVL TAHAYWSQQQ TKQQLKHHST KPCLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-566007061107Telomere binding protein TBP1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.532480.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G037300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014623819.10.0telomere repeat-binding protein 2 isoform X2
RefseqXP_028202454.10.0telomere repeat-binding protein 2-like isoform X2
SwissprotQ6R0E31e-123TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A445GNK70.0A0A445GNK7_GLYSO; Telomere repeat-binding protein 5 isoform A
TrEMBLI1MDE40.0I1MDE4_SOYBN; Uncharacterized protein
STRINGGLYMA15G04200.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-102TRF-like 2