PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G032800.1.p
Common NameGLYMA_15G032800, LOC100815102
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 744aa    MW: 85338.7 Da    PI: 6.9299
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G032800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.82.7e-2629114291
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                          fY+eYAk++GF + k +s++s+ ++e+++++f C ++g++++++++     ++r++ ++gCka+++vk++ dgkw+v+++++eHnHel p
  Glyma.15G032800.1.p  29 FYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRLDGKWYVYSFVKEHNHELLP 114
                          9***************************************999877....9************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-2429114IPR004330FAR1 DNA binding domain
PfamPF105512.5E-28227320IPR018289MULE transposase domain
PROSITE profilePS5096610.361506542IPR007527Zinc finger, SWIM-type
PfamPF044343.7E-7513540IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-7517544IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MDSSAVVGST ISEPHNDMEF ESHEAAYAFY KEYAKSAGFG TAKLSSRRSR ASKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRLDGKWY VYSFVKEHNH ELLPAQAHFF  120
RSHRSSDPLS NDVRMRRRKN SNAVSKLFTA NQNVDCLENF VKHQHDKGRS LVLEAGHAHL  180
LLELFMHMQE ENPKFFYAVD LNEEHRLRNV FWVDAKGLED FTYFSDVVSF DTTYFTSKYK  240
IPLVLFIGVN HHIQPTLLGC ALIADETIYT FAWLLQTWLI AMGERTPQVF LTDQNEAIKA  300
AVAAFLPGTR HCFCLWHILE KIPKQLEFLG AWHDSFLEKF NNCIYKSCTE EQFDKRWWEL  360
VDDFNLRDVE WVQSLYDDRT CWVPTFMKDI SFAGLSTSSR SESLNSLFDK YIQVDTSLRD  420
FIEQYRVILE DRHEEEAKAN FDAWHETPDL KSPSPFEKQM LLVYTHEIFR KFQVEVLGAA  480
ACHLKKENDC MTTTYTVKDF ENNQTYMVEW NTSTSNICCS CHLFEYKGYL CRHAIVVLQM  540
SGVFSIPPKY ILQRWTNAAM SRHPIGGKME EVQSKVRRFN DLCRRAIILG EEGSLSQESY  600
YMALGAISEA LKQCANLNSS VENGMRPDAS STHVVCNVEK EYQSIITSNN KIPDPKLNTG  660
KKAVRTGMAG RSLGSVENSE GNKGKVSQVE EGMVKDGFQQ MELIDSRSQS VMPMQFHGVV  720
PALFHNISSP FHTAPSTHLH ENR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.359220.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G032800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546997.10.0protein FAR1-RELATED SEQUENCE 4 isoform X1
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLI1MD960.0I1MD96_SOYBN; Uncharacterized protein
STRINGGLYMA15G03750.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]