PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G030200.2.p | ||||||||
Common Name | GLYMA_15G030200, LOC100810283 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 260aa MW: 29901.7 Da PI: 6.5155 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 82.7 | 6e-26 | 77 | 167 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++ +++++ + + tr gC+a++++ ++++gkw+vtk+++eH+H+ Glyma.15G030200.2.p 77 EFYIAYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYLHRKDR-VlpPPPATREGCQAMIRLALRDRGKWVVTKFVKEHTHK 165 6******************************************99883333.2448899******************************* PP FAR1 89 la 90 l+ Glyma.15G030200.2.p 166 LM 167 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.1E-23 | 77 | 167 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDHQSGQGFD SDDSDLDMQA EISDKHEKVD EFSKNLEICG GEDEMFVEQP VADISTDIEA 60 VEPFIGMEFN SREEAREFYI AYGRRIGFTV RIHHNRRSRV NNQVIGQDFV CSKEGFRAKK 120 YLHRKDRVLP PPPATREGCQ AMIRLALRDR GKWVVTKFVK EHTHKLMSPS KVPCRGSGKH 180 LVSEDEKDKR IRELSLELYN ERQKCKRRCA AYEEQLNVIL NDLEKHTEHI SKKVAAVVRS 240 IREIEEEKSD SDGGQLEPS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.19471 | 0.0 | cotyledon| leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G030200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003546989.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
Refseq | XP_006597226.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
Refseq | XP_028203073.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_028203074.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A445GNF1 | 0.0 | A0A445GNF1_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform A | ||||
TrEMBL | K7M995 | 0.0 | K7M995_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G03470.3 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 4e-43 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G030200.2.p |
Entrez Gene | 100810283 |