PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G029900.2.p | ||||||||
Common Name | GLYMA_15G029900, LOC100806900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 253aa MW: 28369.9 Da PI: 8.8529 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 89.5 | 4.6e-28 | 89 | 176 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YAk+vGF +r+sk ++s+r+g+ + r +vC++eg+r ++k++ k r+raetr+gC+a++ v+k ++gkw++tk+ eH+H+l+p Glyma.15G029900.2.p 89 FYNAYAKRVGFIIRVSKLSRSRRDGTAIGRALVCNREGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVITKFIMEHTHPLTP 176 ******************************************9988..9**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-25 | 89 | 176 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEFGIDASIN GETVGNATIV QINSSTADGN KVGCSSFNPA YKQGHDDNIT QDSSGGDTIP 60 SGIPAVSVAS VDEPYVGQEF ESEAAAHAFY NAYAKRVGFI IRVSKLSRSR RDGTAIGRAL 120 VCNREGYRMP DKREKIVRQR AETRVGCRAM ILVRKVSSGK WVITKFIMEH THPLTPGKGR 180 RDCIYEQYPN EHDKIRELSQ QLAIERKRSA TYKRHLELIF EQIEEHNDSL SKKIQHIVDS 240 VKEMETKEQN QR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.25928 | 0.0 | flower| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G029900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003546911.1 | 0.0 | protein FAR1-RELATED SEQUENCE 12 isoform X5 | ||||
Refseq | XP_014623881.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2 | ||||
Refseq | XP_014623882.1 | 0.0 | protein FAR1-RELATED SEQUENCE 12 isoform X4 | ||||
Refseq | XP_028202434.1 | 0.0 | protein FAR1-RELATED SEQUENCE 12-like isoform X4 | ||||
Refseq | XP_028202435.1 | 0.0 | protein FAR1-RELATED SEQUENCE 12-like isoform X5 | ||||
TrEMBL | A0A445GNG8 | 0.0 | A0A445GNG8_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform B | ||||
TrEMBL | A0A445GNI2 | 0.0 | A0A445GNI2_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform C | ||||
TrEMBL | I1MD62 | 0.0 | I1MD62_SOYBN; Uncharacterized protein | ||||
TrEMBL | I1MD63 | 0.0 | I1MD63_SOYBN; Uncharacterized protein | ||||
TrEMBL | I1MD64 | 0.0 | I1MD64_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G03440.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 2e-98 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G029900.2.p |
Entrez Gene | 100806900 |