PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G029900.2.p
Common NameGLYMA_15G029900, LOC100806900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 253aa    MW: 28369.9 Da    PI: 8.8529
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G029900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR189.54.6e-2889176291
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                          fYn+YAk+vGF +r+sk ++s+r+g+ + r +vC++eg+r ++k++  k  r+raetr+gC+a++ v+k ++gkw++tk+  eH+H+l+p
  Glyma.15G029900.2.p  89 FYNAYAKRVGFIIRVSKLSRSRRDGTAIGRALVCNREGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVITKFIMEHTHPLTP 176
                          ******************************************9988..9**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-2589176IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEFGIDASIN GETVGNATIV QINSSTADGN KVGCSSFNPA YKQGHDDNIT QDSSGGDTIP  60
SGIPAVSVAS VDEPYVGQEF ESEAAAHAFY NAYAKRVGFI IRVSKLSRSR RDGTAIGRAL  120
VCNREGYRMP DKREKIVRQR AETRVGCRAM ILVRKVSSGK WVITKFIMEH THPLTPGKGR  180
RDCIYEQYPN EHDKIRELSQ QLAIERKRSA TYKRHLELIF EQIEEHNDSL SKKIQHIVDS  240
VKEMETKEQN QR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.259280.0flower| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G029900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546911.10.0protein FAR1-RELATED SEQUENCE 12 isoform X5
RefseqXP_014623881.10.0protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2
RefseqXP_014623882.10.0protein FAR1-RELATED SEQUENCE 12 isoform X4
RefseqXP_028202434.10.0protein FAR1-RELATED SEQUENCE 12-like isoform X4
RefseqXP_028202435.10.0protein FAR1-RELATED SEQUENCE 12-like isoform X5
TrEMBLA0A445GNG80.0A0A445GNG8_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform B
TrEMBLA0A445GNI20.0A0A445GNI2_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform C
TrEMBLI1MD620.0I1MD62_SOYBN; Uncharacterized protein
TrEMBLI1MD630.0I1MD63_SOYBN; Uncharacterized protein
TrEMBLI1MD640.0I1MD64_SOYBN; Uncharacterized protein
STRINGGLYMA15G03440.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.22e-98FAR1 family protein