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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G024500.2.p | ||||||||
Common Name | GLYMA_15G024500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 456aa MW: 49127 Da PI: 9.3292 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.7e-05 | 72 | 94 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Glyma.15G024500.2.p 72 FICEICNKGFQRDQNLQLHRRGH 94 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.3 | 0.00053 | 149 | 171 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Glyma.15G024500.2.p 149 WKCDKCSKKYAVQSDWKAHSKTC 171 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-5 | 71 | 94 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.73E-7 | 71 | 94 | No hit | No description |
PROSITE profile | PS50157 | 10.845 | 72 | 94 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.022 | 72 | 94 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 5.3E-5 | 72 | 94 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 74 | 94 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 240 | 114 | 144 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.6E-4 | 137 | 170 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.73E-7 | 144 | 169 | No hit | No description |
SMART | SM00355 | 150 | 149 | 169 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MSNLTSASGE ASASSGNRTE IGTDYSQQYF APPLSQAQPP PLKKKRNLPG NPDPEAEVVA 60 LSPKTLLATN RFICEICNKG FQRDQNLQLH RRGHNLPWKL KQRSSNEIIR KKVYVCPEAS 120 CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKT CGTREYRCDC 180 GTLFSRRDSF ITHRAFCDAL AEESSRSVTG IGIVANSTST QPTAAAASHQ QDIIHGNSNN 240 FSLKKEQQAG FRPPWIGQPS PSSASSFLVS HQENPNPRGG GPGPTLLPPY QTAPHMSATA 300 LLQKASQMGA TMSKTGSMIG THQQQAHVSA NAALNLSSRD HQMTPTLHGL VPFGNKAVPA 360 VGNGVSPSLL HHIIDSFSSP FEGTSFEDTF GGAGGDAMTK TTTADDGARG NNNEALTRDF 420 LGLRPLSHTD ILNIAGMGSC INSSQHNQTP NPWQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-35 | 145 | 206 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 4e-35 | 145 | 206 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 111 | KLKQRSSNEIIRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.61031 | 0.0 | cotyledon| hypocotyl| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G024500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-146 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006597192.1 | 0.0 | protein indeterminate-domain 11 | ||||
Refseq | XP_025981581.1 | 0.0 | protein indeterminate-domain 11 | ||||
Refseq | XP_028204971.1 | 0.0 | protein indeterminate-domain 11 | ||||
Swissprot | Q8H1F5 | 1e-130 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | I1MCZ6 | 0.0 | I1MCZ6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G02840.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13810.1 | 1e-101 | indeterminate(ID)-domain 11 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G024500.2.p |
Publications ? help Back to Top | |||
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