PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G018400.1.p
Common NameGLYMA_15G018400, LOC100787471
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 216aa    MW: 23937.9 Da    PI: 6.3993
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G018400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-184798156
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         ++y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g+
  Glyma.15G018400.1.p 47 PDYHGVRMRN-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALSIKGH 98
                         68*****998.**********843...6************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.0E-134798IPR001471AP2/ERF domain
CDDcd000181.20E-3047106No hitNo description
PROSITE profilePS5103222.08948105IPR001471AP2/ERF domain
SMARTSM003807.3E-3548111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-3148106IPR001471AP2/ERF domain
PRINTSPR003671.8E-94960IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-2149105IPR016177DNA-binding domain
PRINTSPR003671.8E-97187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MTETTRCHET PSSSTSTSNS STSKPPKRNK TEKQSKAKRN RDPTKHPDYH GVRMRNWGKW  60
VSEIREPRKK SRIWLGTFAT PEMAARAHDV AALSIKGHTA ILNFPNIVNM LPRPVTCAPR  120
DIQAAAAEAA AMVEFDREGS EAESSELSEI VELPNIEESF ESVESRSEFT LIDSVDSWVY  180
PPPMAVGSIG DMMMLGEHEC GLFQFATDHQ KTCSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-19441101077Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G018400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546954.11e-160ethylene-responsive transcription factor ERF036
SwissprotQ9LYD31e-57DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLI1MCT51e-159I1MCT5_SOYBN; Uncharacterized protein
STRINGGLYMA15G02130.11e-160(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-47ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]