PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G011100.1.p | ||||||||
Common Name | GLYMA_15G011100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 73aa MW: 8225.22 Da PI: 7.6771 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.5 | 6.4e-05 | 2 | 40 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +R +++ ++++ L++l+ + +K + ++L +A+ YI+ L Glyma.15G011100.1.p 2 QRKEKLGERIAALQQLVSPF-----GKTDTTSVLHEAIGYIRFL 40 67788999*********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.833 | 1 | 40 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-11 | 2 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-7 | 2 | 45 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 73 aa Download sequence Send to blast |
MQRKEKLGER IAALQQLVSP FGKTDTTSVL HEAIGYIRFL HDQVPVLCSP YLESSPSSYH 60 QNQHDPSSNT WR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G011100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT091865 | 1e-116 | BT091865.1 Soybean clone JCVI-FLGm-9A23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014618881.1 | 2e-34 | transcription factor bHLH113 isoform X1 | ||||
Refseq | XP_025979969.1 | 2e-34 | transcription factor bHLH113 isoform X2 | ||||
Swissprot | Q9LT67 | 3e-24 | BH113_ARATH; Transcription factor bHLH113 | ||||
TrEMBL | A0A0R0G3E0 | 3e-47 | A0A0R0G3E0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G01381.1 | 8e-37 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10321 | 21 | 29 | Representative plant | OGRP1342 | 13 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 1e-26 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G011100.1.p |
Publications ? help Back to Top | |||
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