PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G002100.1.p
Common NameGLYMA_15G002100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 631aa    MW: 73284.4 Da    PI: 7.1415
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G002100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.54e-221294290
                 FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                         fYn YAke GF vr++++ ++ +++e +++++ Cs  g++++++ +     r+r+etrtgC a++k +++++ +w+++++el+HnH ++
  Glyma.15G002100.1.p 12 FYNWYAKEQGFGVRVTNTWYR-KTKERYRAKLSCSSAGFKKRTEAN-----RPRPETRTGCPAMIKFRLMDSTRWRIIEVELDHNHLIN 94
                         9****************9997.67779*************998877.....***********************************775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-191294IPR004330FAR1 DNA binding domain
PfamPF105512.7E-23219313IPR018289MULE transposase domain
PROSITE profilePS509668.84506542IPR007527Zinc finger, SWIM-type
SMARTSM005750.0011517544IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MEFDSYDDVY YFYNWYAKEQ GFGVRVTNTW YRKTKERYRA KLSCSSAGFK KRTEANRPRP  60
ETRTGCPAMI KFRLMDSTRW RIIEVELDHN HLINPTSGKF YKSHKHIPLG TKRTFHLDDD  120
HDHHHHLDAA AAQQVHKITM FRTVIVDAQD EGESQNALYS NQLKLNKGDS QAILNFFSHQ  180
QLADPHFFYV VDVNERGCLR NLFWADAKSR VAYTYFGDVV AIDTACLTAE FQVPLVLFLG  240
INHHKQSILF GCGLLAGDTI ESYTWLFRAW LTCILGRPPQ VIITNQCGIL QTVVADVFPR  300
STHCLCLFNI MQKIPEKLGV CIDYEATNAA LSRAVYSSLM AEEFEATWED MMKSNETRDN  360
KWLQSLYEDR KRWAPVYLKE IFLAGMLPIQ PSDVASFFFD GYLNEQTSLK EFLEKYDQIL  420
QTKRQLEALA DLDSKSSSFE PKSRSYFVLQ VSKLYTNEIL RMFEREVEGM FSCFNSRQIN  480
ADGPVVTYIV QEQVEVEGNQ RDARDYKVCY NEAEMEVLCI CGLFNFRGYL CRHALFILSQ  540
NGIKEIPAQY ILSRWRKDMK RSNVDDHNGG GIHISNPVHR YDHLYRQVVK VVEEGKKSHD  600
HYRTAVHALE NILSKLHLVN VEDPNIMYKY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G002100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546566.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
RefseqXP_006597089.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
RefseqXP_025981518.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
RefseqXP_025981519.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
RefseqXP_028204620.10.0protein FAR1-RELATED SEQUENCE 6-like isoform X1
RefseqXP_028204621.10.0protein FAR1-RELATED SEQUENCE 6-like isoform X1
RefseqXP_028204622.10.0protein FAR1-RELATED SEQUENCE 6-like isoform X1
TrEMBLA0A445GLV80.0A0A445GLV8_GLYSO; Protein FAR1-RELATED SEQUENCE 6 isoform A
STRINGGLYMA15G00440.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6